Cupriavidus nantongensis: A2G96_10350
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Entry
A2G96_10350 CDS
T09823
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cnan
Cupriavidus nantongensis
Pathway
cnan03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cnan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A2G96_10350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cnan03400
]
A2G96_10350
Enzymes [BR:
cnan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A2G96_10350
DNA repair and recombination proteins [BR:
cnan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A2G96_10350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AMR78117
UniProt:
A0A142JJ55
LinkDB
All DBs
Position
1:complement(2204066..2207515)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPDATPAFPFVNLPLVKPGLRHSVAGLRGSADALAVAAYARQHRARAPMLAVVCSHAVDA
QRLAEEIPWFAPELRVRLLPDWETLPYDSFSPHQDLVSERLATLHDIQSGQCDVMLVPAT
TALYRLAPPAFLAAYTFFFKQGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDL
YPMGSALPYRIDLFGDEIETIRAFDPDTQRSLYPVKEVRLLPGREFPLDEAARTAFRGRW
REVFEGDPTKSPIYKDIGNGVPSAGIEYYLPLFFEHSATVFDYLPADTQLVFAGNIDEAI
RRFWADTTQRYNFMRHDRERPLLPPADLFLSEEQFFVAAKPMARLVLQVEAGADQPAFSG
ILPDVAVNRRAEDPLVNLESLLLDQQTRVLMCADSAGRRETLLQLFAESGLRPHPVEDFA
AFLAGDAHFSIAVAPLQSGFALPQARLAFVTEAELYAGTARRTGRRKQEQASAVDSMVRD
LAELKIGDPVVHSEHGIGRYQGLVTLDMGQGDEEFLHLDYDKGSKLYVPVHQLHVISRYS
GADPDTAPLHHLGSGQWDKAKRKAAQQIRDTAAELLNLYARRAAREGFAFPLSPKDYETF
AESFGFEETPDQAAAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVLGGKQVA
MLAPTTLLAEQHFQTLSDRFAEWPVRIVELSRFKTRKEIDAAIKQINEGSVDIVIGTHKI
LSDQVKFQRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDF
SVIATAPQKRLAIKTFVRREEDGVIREAILRELKRGGQVYFLHNEVETIENKRARLAELV
PEARIAVAHGQMHERELERVMRDFVSRRDNILLCTTIIETGIDVPTANTILIHRADKFGL
AQLHQLRGRVGRSHHQAYAYLLVHDVDGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIR
GAGEVLGDKQSGEIHEIGFQLYTDMLNHAVKALKAGKEPDLMAPLAATTEINLGTPALLP
NDYCADVHERLSLYKRLANCETPERVDDIQEELVDRFGRLPAQAQALVETHRLRIAAAPL
GVRKIDAGEATISVQFVPNPPIDAMRIIDLVQKNRHIKLAGQDKLRIEARMPDVAVRAQT
IKHTLRQLA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgcctgacgccacgcccgcctttccctttgtcaacctgccgctggtcaagccggggctg
cgccacagcgtggccggcctgcgcggctcggccgatgcgctggcggtggccgcatacgcg
cgccagcaccgcgcgcgcgcgccgatgctggcggtggtgtgctcgcatgcggtcgatgcg
cagcgcctggccgaggaaatcccgtggttcgcgccggagttgcgcgtgcgcctgctgccc
gactgggaaaccctgccctacgacagcttttcgccgcaccaggacctggtctccgagcgt
ttggcgacgctgcacgacatccagagcggccagtgcgacgtgatgctggtgcccgccacc
accgcgctgtaccggctggcgccgccggccttcctggccgcctacaccttcttcttcaag
cagggcgagcggctcgacgaggccgcgctcaaggcgcagttcacgctggcgggctacgag
catgtcagcgcggtgatgcggccgggcgagtacagcgtgcgcggcggcctgatcgacctg
tacccgatgggctcggcgctgccataccgcatcgacttgttcggcgacgagatcgagacc
atccgcgccttcgatccggacacgcagcgcagcctgtatccggtcaaggaagtgcggctg
ctgcccgggcgcgagttcccgctcgacgaggccgcgcgcaccgcgttccgcggccgctgg
cgcgaagtgttcgaaggcgacccgaccaagtcgccgatctacaaggacatcggcaacggc
gtgccgtcggccggcatcgagtattacctgccgctgttcttcgagcacagcgcgaccgtg
ttcgactacctgcccgccgacacccagctggtgttcgccggcaacatcgacgaggccatc
cgccgcttctgggccgacaccacccagcgctacaacttcatgcgccacgaccgcgagcgc
ccgctgctgccgccggcggacctgttcctgtccgaggagcagttcttcgtcgccgccaag
ccgatggcgcggctggtgctgcaggtcgaggccggcgcggaccagccggcgttctcgggc
atcctgcccgacgtcgcggtcaaccgccgcgccgaagatccgctggtcaacctggagtcg
ctgctgctcgaccagcagacccgcgtgctgatgtgcgccgactccgccgggcggcgcgag
acgctgctgcagctctttgccgaaagcggcctgcgcccgcatccggtcgaagactttgcc
gcgttcctcgccggcgacgcgcatttctcgatcgcggtggcgccgctgcagagcggcttc
gcgctgccgcaggcacggctggccttcgtcaccgaagccgagctgtacgccggcaccgcg
cgccgcaccggccgccgcaagcaggagcaggcgtcggccgtcgattcgatggtgcgcgac
ctggccgagctgaagatcggcgatccggtggtgcacagcgagcacggcatcggccgctac
cagggcctggtgacgctcgacatgggccagggcgacgaggaattcctgcacctggactac
gacaagggcagcaagctctacgtgccggtgcaccagttgcacgtgatctcgcgctattcg
ggcgccgatcccgataccgcgccgctgcaccacctcggctccggccagtgggacaaggcc
aagcgcaaggcggcgcagcagatccgcgacaccgctgccgaactgctcaacctgtacgcg
cgccgcgccgcgcgcgagggcttcgccttcccgctgtcgccgaaggactacgagaccttc
gccgagagcttcggcttcgaggaaaccccggaccaggccgccgcgatcgccgcggtgatc
gccgacatgacctcgggcaagccgatggaccggctggtgtgcggcgatgtcggcttcggc
aagaccgaggtggcgctgcgcgcggccttcgtcgcggtgctgggcggcaagcaggtggcg
atgctggcgccgaccacgctgctggccgagcagcatttccagaccctgtccgaccgcttc
gccgaatggccagtgcggatcgtggaattgtcgcgcttcaagaccaggaaggagatcgac
gcggcgatcaagcagatcaacgagggcagcgtcgacatcgtcatcggcacccacaagatc
ctgtccgaccaggtcaagttccagcgcctgggcctggtcatcatcgacgaggaacaccgc
ttcggcgtgcgccagaaggaagcgctgaagtcgctgcgcgccgaggtcgacgtgctgacg
ctgaccgccacgccgatcccgcgcacgctgggcatggcactggaaggcctgcgcgatttc
tcggtgattgccaccgcgccgcagaagcggctggcgatcaagaccttcgtgcggcgcgag
gaagacggcgtgatccgcgaggccatcctgcgcgagctcaagcgcggcgggcaggtgtac
ttcctgcacaacgaggtcgagaccatcgagaacaagcgcgccaggcttgccgagctggtg
cccgaggcgcgcatcgcggtggcgcacggccagatgcacgagcgcgagctggagcgcgtg
atgcgcgacttcgtctcgcgccgcgacaatatcctgctgtgcaccaccatcatcgagacc
ggcatcgacgtgccgaccgccaacaccatcctgatccaccgcgccgacaagttcgggctg
gcacagctgcaccagctgcgcggccgcgtcgggcgctcgcaccaccaggcctatgcctac
ctgctggtccatgacgtcgacggcctgaccaagcaggcgcagcgacggctcgaggcgatc
cagcagatggaggaactgggctcgggcttctacctggccatgcacgacctggaaatccgc
ggcgccggcgaggtgctgggcgacaagcaatcgggcgagatccacgagatcggcttccag
ctctacaccgacatgctcaaccacgcggtcaaggcgctcaaggccggcaaggagcccgac
ctgatggcgccgctggccgccaccaccgagatcaacctgggcacgccggcgctgctgccc
aacgactactgcgccgacgtgcacgagcgcctgtcgctgtacaagcggctggccaactgc
gagaccccggagcgtgtcgacgatatccaggaagagctggtcgaccggttcggccggctg
ccggcgcaggcgcaggcgctggtcgagacccaccggctgcgcatcgccgcggcaccgctg
ggcgtgcgcaagatcgacgccggcgaggccaccatcagcgtgcagttcgtgcccaacccg
ccgatcgatgcgatgcgcatcatcgacctggtacagaagaaccgccatatcaagctggcg
ggacaggacaaactgcgcatcgaggccaggatgccggacgtggcggtgcgcgcgcagacc
atcaagcatacgctgcggcaactggcgtag
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