Cupriavidus nantongensis: A2G96_17220
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Entry
A2G96_17220 CDS
T09823
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cnan
Cupriavidus nantongensis
Pathway
cnan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A2G96_17220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnan03019
]
A2G96_17220
Enzymes [BR:
cnan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A2G96_17220
Messenger RNA biogenesis [BR:
cnan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A2G96_17220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Fe-ADH
AAA_22
HEM4
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AMR79335
UniProt:
A0A142JMM3
LinkDB
All DBs
Position
1:complement(3733624..3735126)
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AA seq
500 aa
AA seq
DB search
MTTTNAPEPTTAAPAAVQTFDSFGLDARILRALSEQGYSSPTPIQAQAIPVVLLGKDVMG
AAQTGTGKTAGFALPIIQRLLPLANASASPARHPVRALMLTPTRELADQVYDNVARYAKH
TDLRSTVVFGGVDMNPQTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRM
LDMGFLPDLQRIINLLPAQRQTLLFSATFSPEIKRLASSYLKQPVTIEVARSNSTNENVR
QAVYQVEDGHKQAAVVHLLRQRAEQSQSRQCIVFVNSKIGCSRLARHLEREGINAAAIHG
DKTQTERMQTLDGFKSGTIDALVATDVAARGLDIPDMPCVINFDLPFSAEDYVHRIGRTG
RAGASGDALSIYVPGNDERLLSDIEKLIKRSIPRGKLEGFDPTGARARQADTERRRERGE
VRRARGSADSEERPRRHDHGASRQAFRASDDPFFSRPYEPSPASATQAKAADEVAAALTR
GRQAPKRPVAALLGGVPRKS
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgaccactacgaacgcaccagaacctaccaccgcggctcccgccgccgtgcagaccttc
gacagcttcggcctcgacgcgcgcatcctgcgtgccctgtccgagcagggctacagctct
cccacgccgatccaggcgcaggccattccggtggtgctgctgggcaaggacgtgatgggc
gccgcgcagaccggcaccggcaagaccgccggcttcgcgctgccgatcatccagcgcctg
ctgccgctggccaatgccagcgcctcgccggcgcgccacccggtgcgcgcgctgatgctg
acccccacgcgcgagctggccgaccaggtctacgacaacgtcgcccgctatgccaagcac
accgacctgcgcagcacggtggtgttcggcggcgtcgacatgaacccgcagaccgacgcg
ctgcgacgcggcgtcgagatcctggtggccacgcccggccgcctgctcgaccacgtgcag
cagaagtcggtgaacctgtcgcaggtgcagatgctggtgctggacgaagccgaccgcatg
ctcgacatgggcttcctgccggacctgcagcgcatcatcaacctgctgccggcgcagcgc
cagacgctgctgttctcggcgacgttctcgcccgaaatcaagcggctcgcctccagctac
ctgaagcagccggtcaccatcgaagtggcgcgcagcaactcgaccaacgagaacgtgcgc
caggcggtgtaccaggtcgaggacggccacaagcaggccgcggtggtgcacctgctccgg
cagcgcgccgagcagtcgcagtcgcgccagtgcatcgtcttcgtcaacagcaagatcggc
tgctcgcggctggcacggcacctggagcgcgaaggcatcaacgccgccgcgatccacggc
gacaagacccagaccgagcgcatgcagacgctcgacggcttcaagagcggcaccatcgat
gcgctggtcgccaccgacgtcgccgcgcgcgggctcgacatccccgacatgccgtgcgtg
atcaacttcgacctgccgttcagcgccgaagactacgtgcaccgcatcggccgtaccggc
cgcgccggtgccagcggcgacgcgctgtcgatctacgtgccgggcaatgacgagcgcctg
ctgtccgatatcgagaagctgatcaagcgcagcatcccgcgcgggaagctcgagggcttc
gaccccaccggcgcgcgcgcccgccaggccgacaccgaacgccgccgcgagcgcggcgaa
gtgcgccgcgcgcgcggcagcgccgacagcgaagagcgtccgcgccgccacgaccacggt
gccagccgccaggccttccgcgcctcggacgacccgttcttctcgcgcccgtatgagccc
agccccgccagcgcgacgcaggccaaggccgccgacgaagtcgccgccgcactgacgcgc
ggccgccaggcgcccaagcggccggtggcggccttgctcggcggggtgccgcgcaagtcc
tga
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