Cupriavidus nantongensis: A2G96_22830
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Entry
A2G96_22830 CDS
T09823
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cnan
Cupriavidus nantongensis
Brite
KEGG Orthology (KO) [BR:
cnan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cnan03016
]
A2G96_22830
Enzymes [BR:
cnan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
A2G96_22830
Transfer RNA biogenesis [BR:
cnan03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
A2G96_22830
Prokaryotic type
tRNA splicing ligases
A2G96_22830
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AMR80677
UniProt:
A0A142JRG5
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All DBs
Position
2:325174..326403
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AA seq
409 aa
AA seq
DB search
MAGKTQYDVLDTGAGKPVKLWTRGVPVEGAAREQLVNTARMPFIFRHLAVMPDVHLGKGS
TIGSVIPTVGAVIPAAVGVDIGCGMMAVKTSLTASDLPDNLGQLRSAIEHAVPHGRSAQG
GRRDQGAWGNAPAHVDAAWAEMAPGFRRITDKYPHLARANHRNHLGTLGTGNHFIEVCLD
ESQSVWFMLHSGSRGIGNAIGTTFITLAQQDMRQHLANLPDRDLAYLVEGSSHYEDYIYA
VSWAQSYARRNRELMMEAVLAAAQRVLRKPFQAQLEAVNCHHNYVQKEHHFGADVLVTRK
GAVSARAGELGIIPGSMGARSFIVRGKGNPESFCSCSHGAGRTMSRSEAKRRFTVADQKQ
ATQGVECRKDAAVIDEIPMAYKDIDAVMAAQSDLVEVVHTLRQVVCVKG
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atggcaggtaagacccaatacgacgtcctcgacaccggcgccggcaagccggtcaagctg
tggacgcgcggcgtgccggtggagggcgccgcgcgcgagcaactggtgaatacggcccgg
atgccgttcatcttccgccatctggcggtgatgccggacgtacatctgggcaaggggtcg
acgatcggctcggtgattccgaccgtcggcgccgtcattcccgctgcggtaggcgtcgat
atcggctgcggcatgatggcggtaaagacctcgctgaccgcctccgacctgcccgacaac
ctgggccagctgcgcagcgcgatcgagcatgccgtgccgcatggccgcagcgcgcagggc
gggcggcgcgaccagggcgcgtggggcaacgcgccggcgcacgtcgatgccgcctgggcc
gagatggcgccgggctttcgccgcatcaccgacaaatacccgcacctggcgcgcgccaac
catcgcaatcaccttggcacgctgggcaccggcaaccactttatcgaggtgtgcctggac
gagtcgcagtcggtctggttcatgctgcacagcggctcgcgcggcatcggcaatgcgatc
ggcaccaccttcatcacgctggcgcagcaggacatgcgccagcacctggccaacctgccg
gaccgcgacctggcttacctggtggaaggctcctcgcactacgaggactacatctacgcg
gtgtcatgggcgcagtcctacgctcgccgcaaccgcgagctgatgatggaggcggtgctg
gccgcggcgcagcgggtgctgcgcaagccgttccaggcgcagctggaggcggtgaactgc
caccacaactacgtgcagaaggaacatcacttcggcgccgacgtgctggtcacgcgcaag
ggcgcagtcagcgcgcgcgccggcgagctgggcatcatcccgggctcgatgggcgcgcgc
tcgttcatcgtgcgcggcaagggcaatccggagtcgttctgttcctgcagccacggcgcg
ggccgcaccatgagccgcagcgaggccaagcgccgcttcaccgtggccgaccagaagcag
gccacgcaaggcgtggaatgccgcaaggacgccgccgtgatcgacgagatcccgatggcg
tacaaggacatcgacgcggtgatggcggcgcagtcagacctggtggaggtggtgcacacg
ctgcggcaggtggtgtgcgtgaagggttga
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