Cupriavidus nantongensis: A2G96_29875 Help Entry A2G96_29875       CDS       T09823                                  Symbol ligD Name (GenBank) ATP-dependent DNA ligase   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism cnan  Cupriavidus nantongensis Pathway cnan03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:cnan00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     A2G96_29875 (ligD)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:cnan03400]     A2G96_29875 (ligD) Enzymes [BR:cnan01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      A2G96_29875 (ligD) DNA repair and recombination proteins [BR:cnan03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      A2G96_29875 (ligD) BRITE hierarchy Motif Pfam:  LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S Motif Other DBs NCBI-ProteinID:  AMR81946 UniProt:  A0A142JV34 LinkDB All DBs Position 2:2005284..2008112 Genome browser AA seq 942 aa AA seqDB search MAKTTSQDSRAPRAAGKRATKPAAGTGSKPAKTSSAKPATKRAASVRPAARATGTPAALE KYRRMRDFGATPEPSGAAARAAPRKRAAELSFVIQKHAARRLHYDFRLELGGTLKSWAVP KGPSLDPADKRMAVHVEDHPMDYAGFEGVIPAGHYGAGTVIVWDRGTWVPVGDPEAGYRS GKLKFELRGEKLHGHWTLVRMHGSRQKEQDAWLLIKERDDAAVPASEFDVVEALPDSVLG GTQRKPAARRAGAGKATKATKATKAAEAPEAPAPAAHDAIRALKPPPGATRAALPLALAP QLATLVEKPPPDADAWRYEIKFDGYRLLARVDGNDVRLFTRQGHDWTSKLRALARDVGAL GLPDGWLDGEIVVLGKRGETDFQALQNAFDTARVEAIQYFVFDLPYCAGHDLRKVPLVER RALLRRVFEHNMSPRLQFSEDFEASAGDMLDAACRMKLEGVIGKRVDSGYVSARSNTWIK LKCTLRQEFVVAGFTDPKGSRNGIGSLLLGVHDSGGRLRYAGNVGTGFDTRTLDELRAQL DALRADASPFHTVPSGVRGHWVRPKLVAEVSFGSWTREGRVRHAVFHGLRTDKPAGAVSV EQPAAPANKGKAAATTQDKPATKAATKPATKPASKARAGAAKRQTAVDGKVSISNAGRVI DAESGLTKGELVRYYERAAPLMLPHLRGRPIAMVRAPSGVGGEQFFQRHSDTLRVDGLNV LDPGLWPGHPALLEIASAEALVAAAQLNVVEFHTWNASKRSIDRPNRIIFDLDPGEGVPW AQVQEAAALMKALLDELGLASFLKTSGGKGLHVVVPVTPRAGWDELKDFARDVVLHVAAT LPQRFVAKSGARNRVGKIFIDYLRNGMGATTVAAFSARARPGLGVSIPVAWEELDTLTSA AQWTVANVEARLDALEADDPWADYAETRQAITRAAARLARAG NT seq 2829 nt NT seq  +upstreamnt  +downstreamnt atggccaagaccacttcgcaggactcgcgcgcgccgcgcgccgctggcaagcgcgcgacc aagcctgccgccgggacgggcagcaagcccgccaagacgagttcggcgaagcccgccacc aagcgcgccgcaagcgttcggccagcggcacgggccaccggcacgcccgcggcgcttgaa aaataccgccgcatgcgcgacttcggcgccacgcccgagcccagcggcgccgctgcccgc gccgcaccgcgcaagcgcgccgcggagctgtcgttcgtgatccagaagcatgcggcgcgg cggctgcactacgacttcaggctggagctgggcggcacgctgaagagctgggccgtgccc aaggggcccagcctggatcccgccgacaagcgcatggcggtccatgtcgaagaccatccg atggactacgccggcttcgagggcgtgattcccgccggccactatggcgccggcacggtg atcgtgtgggaccgcggtacctgggttccggtgggcgatcccgaggccggctaccgcagc ggcaagctcaagttcgagctgcgcggcgaaaaactgcacgggcactggaccctggtgcgc atgcacggcagccgtcagaaggaacaggacgcatggctgctgatcaaggaacgcgacgac gccgcggtgccggcatcggagttcgacgtggtcgaagccctgcccgacagcgtgctgggc ggcacgcagcgcaagcccgcggccaggcgcgccggcgccggcaaggcgacaaaggcgaca aaggcgacgaaggcggccgaagcgcccgaagcccctgcaccagctgcacacgatgccatc cgcgcgctgaagccaccgcccggcgccacgcgcgcggcgctgccgctggcgctggcgccg caactggcgacgctggtcgagaagcccccgcccgacgccgacgcctggcgctacgagatc aagttcgacggctaccggctgctggcgcgcgtcgacggcaacgatgtgcggctgttcacg cgccagggccatgactggaccagcaagctgcgcgcgctggcgcgcgatgtcggcgcgctg ggcctgcccgacggctggctcgacggcgagatcgtggtgctcggcaagcgcggcgagacc gatttccaggccttgcagaatgccttcgataccgcgcgtgtcgaagccatccagtacttt gtgttcgacctgccctactgcgccggccatgacctgcgcaaggtgccgctggtggaacgc cgcgcgctgctgcgccgggtcttcgagcacaacatgtcgccgcgcctgcagttcagcgaa gacttcgaagccagcgccggcgacatgctcgacgcggcgtgccgcatgaagctcgaaggc gtgatcggcaagcgcgtggactccggctacgtcagcgcgcgcagcaatacgtggatcaag ctcaaatgcaccctgcgccaggaattcgtggtagcgggctttaccgatcccaagggcagc cgcaatggcattggctcgctgctgctgggcgtgcatgacagcggcgggcgcctgcgctat gcgggcaatgtcggcaccggcttcgacacccgcacgctcgacgaactgcgcgcgcagctc gacgcgctgcgcgccgatgcgtcaccgttccacaccgtgccgtccggcgtgcgcgggcat tgggtcaggccgaagcttgtggccgaagtctcgttcggcagctggacccgcgaaggccgg gtgcgccatgcggtgttccacggcctgcgcaccgacaagcccgccggcgcggtctcggtc gagcagccggcggcgcccgcgaacaaaggcaaggcggcggccacgacgcaggacaagccg gcgaccaaagccgccaccaagccagcaaccaagcctgcgtccaaagccagggccggcgca gcaaagcgccagaccgcagtggacggcaaggtctcgatcagcaacgccgggcgcgtgatc gatgccgagtccggcctgaccaagggcgaactggtgcgctactacgaacgcgccgcaccg ctgatgctgccgcacctgcgcggccggccgatcgcgatggtgcgcgcgccatcgggcgtg ggcggcgagcagttcttccagcgccacagcgacacgctgcgcgtggacggcctcaacgtg ctggaccccggactctggccgggacatcccgccttgctggaaatcgcctcggccgaggcg ctggtcgcggctgcgcagctcaacgtggtcgagttccacacctggaatgcgagcaagcgc agcatcgaccggcccaaccgcatcatcttcgacctcgaccccggcgagggggtaccgtgg gcacaggtgcaggaggcggccgcgctgatgaaggcgctgctggacgagctggggctggcc agctttctcaagaccagcggcggcaaggggctgcacgtggtggtgccggtgaccccgcgc gcgggctgggacgagctgaaggatttcgcgcgcgacgtggtgctgcatgtggccgcgacg ctgccgcagcgcttcgtcgccaagagcggcgcgcgcaatcgcgtcggcaagattttcatc gattacctgcgcaacggcatgggcgccaccaccgtggccgcattctcggcgcgcgcgcgg cctgggctgggcgtatcgattccggtggcgtgggaggaactggacaccttgaccagcgcc gcgcaatggaccgtcgccaacgtcgaagcccggctggacgcgctcgaggcggacgacccg tgggcggactacgccgagacccggcaggccatcacgcgcgccgcggcacggctggcgcgg gccggatag

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