Cryptococcus deneoformans B-3501A: CNBA0080
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Entry
CNBA0080 CDS
T01040
Name
(RefSeq) hypothetical protein
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
cnb
Cryptococcus deneoformans B-3501A
Pathway
cnb03018
RNA degradation
cnb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cnb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CNBA0080
09123 Folding, sorting and degradation
03018 RNA degradation
CNBA0080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnb03019
]
CNBA0080
03041 Spliceosome [BR:
cnb03041
]
CNBA0080
Messenger RNA biogenesis [BR:
cnb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CNBA0080
mRNA degradation factors
5'-3' decay
Lsm complex
CNBA0080
Spliceosome [BR:
cnb03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
CNBA0080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF4746
Motif
Other DBs
NCBI-GeneID:
4933274
NCBI-ProteinID:
XP_778001
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All DBs
Position
1:<25085..>25915
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AA seq
216 aa
AA seq
DB search
MASTILPLELVDRCIGSPIWVLMKNEREFTGTLMGFDDYVNMVLKDVKEYEVTASGITET
DLGDTLLNGNNIAMVRTTTHLPSPLEIELCSWYGYYCTISRNYMSAPFFLGRDCFPRRDS
ILCVLWKREYWGRNADIFPSYPHSLYQVARDPRLRSYPSIHLPTNANTTNHKIPTTIMNI
EMKMKVLRQRDNTGRKRSDVDVAGYRRQLWIEIGLG
NT seq
651 nt
NT seq
+upstream
nt +downstream
nt
atggccagtacaatcctccccctcgaacttgtcgacagatgtatcggctcccctatctgg
gtcttgatgaagaatgaacgagagtttactgggactttgatgggtttcgatgactatgtt
aacatggttttgaaagatgtcaaggaatacgaagttactgcttcgggaatcacagagacc
gatcttggggatactttgttaaacgggaacaacatcgccatggtacgtacaactacccat
cttccctcgcctctcgaaatcgagctttgctcttggtatggctattattgtactatcagc
cgtaattacatgtctgctcctttctttttgggaagagactgctttccgcggcgagattcc
atattatgtgtcttgtggaaaagagaatactgggggcggaatgctgatatatttccttcc
tacccacacagcttataccaggtggcaagggacccaaggcttagatcctatccatccatc
catctcccgacaaatgcaaatacaacaaatcataaaataccaaccactattatgaatatc
gagatgaagatgaaggtgctgaggcagagggacaatacgggacggaaaaggagtgatgtt
gatgtggcaggataccgtcggcagttatggatcgagattggtctgggatga
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