Cryptococcus deneoformans B-3501A: CNBA7000
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Entry
CNBA7000 CDS
T01040
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cnb
Cryptococcus deneoformans B-3501A
Pathway
cnb03013
Nucleocytoplasmic transport
cnb03015
mRNA surveillance pathway
cnb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cnb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CNBA7000
09122 Translation
03013 Nucleocytoplasmic transport
CNBA7000
03015 mRNA surveillance pathway
CNBA7000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnb03019
]
CNBA7000
03041 Spliceosome [BR:
cnb03041
]
CNBA7000
Enzymes [BR:
cnb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CNBA7000
Messenger RNA biogenesis [BR:
cnb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CNBA7000
Spliceosome [BR:
cnb03041
]
Complex C
Other components
EJC/TREX
CNBA7000
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CNBA7000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Ned1_M
AAA_19
CMS1
Motif
Other DBs
NCBI-GeneID:
4933966
NCBI-ProteinID:
XP_777578
UniProt:
P0CQ97
LinkDB
All DBs
Position
1:1959046..1961171
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AA seq
442 aa
AA seq
DB search
MINSTNLNLTIKMSRPDEEELVDYDEAAEEILPPAPAAETNGDKADGDKKGSYVGIHSTG
FRDFLLKPELLRAISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQ
IEPVDGEVSIIILCHTRELAYQIKNEFTRFSKFMTNVRTGVFYGGTPISADQEILANKEK
CPHIVVGTPGRTMALVRDKKLNASKVKHFVLDECDKMLEQLDMRRDVQEIFRATPHHKQV
MMFSATLSKDIRATCKKFMQSPLEIYVDDETKLTLHGLQQFYLKLEEREKNRKLNDLLDN
LEFNQVCIFVKSVQRATQLDALLQECNFPSICIHSGLQQAERISRFQQFKAFEKRILVAT
DIFGRGIDVERVNVVINYDAPSDADSYLHRVGRAGRFGTKGLAISFVSSDADQEVLQRIQ
ERFTVAIPTLPETVDPATYMTS
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgataaacagcaccaacctcaacttgaccatcaaaatgtcccgacccgacgaagaagaa
cttgttgactacgatgaggccgctgaggagatcctgccccccgcccccgccgccgagacc
aacggcgataaggcggatggtgacaagaagggttcatatgtcggtatccactcgaccggt
ttcagggatttccttttgaagcccgagctcctccgagccatctctgatctcggtttcgag
cacccctctgaggttcaacaggaatgtattccccaggccatcctcggtacagatgttctg
tgtcaagccaagtctggtatgggtaagacggctgtgtttgtgcttgccgctttgcaacag
attgaacccgttgatggcgaggtttctatcatcattctctgtcacactcgagagcttgcc
tatcagatcaagaatgagtttactcgtttttccaaatttatgaccaatgtccgaactggt
gtcttctacggtggtactcccatctctgccgaccaggagatccttgccaacaaggaaaag
tgccctcacatcgttgttggtacccctggccgaaccatggccctcgtccgtgacaagaag
ctcaacgcaagcaaggtcaagcactttgttcttgacgagtgcgacaagatgctcgaacaa
cttgatatgcgacgagacgttcaggaaatcttccgagccacgcctcaccacaagcaggtt
atgatgttctccgccaccctttccaaggacatccgagctacttgcaaaaagtttatgcaa
agccctcttgagatttacgtcgatgatgagaccaagttgaccctccacggtcttcaacaa
ttctacctcaagctcgaggagagggagaagaacaggaagctcaacgacttgttggacaat
ctcgaattcaaccaggtctgcatctttgtcaagtctgttcaacgtgctactcagctcgac
gctctcttgcaagagtgcaacttcccctccatctgtatccactctggtcttcaacaagcc
gagcgaatctctcgattccagcagttcaaggcttttgagaagcgaatcctcgttgctacc
gacatctttggtcgaggtatcgatgttgagcgagtgaacgttgtcatcaactatgacgct
ccctcggatgccgactcttacctccaccgagtcggtcgtgctggtcgattcggcaccaag
ggtcttgccatctcctttgtctctagcgacgccgaccaagaggtccttcaaaggatccag
gagcggttcaccgttgccatccccactttgcccgagactgtcgaccccgccacttacatg
acttcgtaa
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