KEGG   Cryptococcus deneoformans B-3501A: CNBA7540
Entry
CNBA7540          CDS       T01040                                 
Name
(RefSeq) hypothetical protein
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
cnb  Cryptococcus deneoformans B-3501A
Pathway
cnb03020  RNA polymerase
cnb03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cnb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CNBA7540
  09124 Replication and repair
   03420 Nucleotide excision repair
    CNBA7540
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cnb03021]
    CNBA7540
   03400 DNA repair and recombination proteins [BR:cnb03400]
    CNBA7540
Transcription machinery [BR:cnb03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     CNBA7540
  RNA polymerase III system
   RNA polymerase III
     CNBA7540
  RNA polymerase I system
   RNA polymerase I
     CNBA7540
DNA repair and recombination proteins [BR:cnb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CNBA7540
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N NA-iREase1 Mrr_cat
Other DBs
NCBI-GeneID: 4934020
NCBI-ProteinID: XP_777633
LinkDB
Position
1:<2117413..>2118467
AA seq 221 aa
MSNEANRELARLWRVSRTVHEMVRDRGYLLADYEINVSFEEFKDRHGATGSVEWMKCPQA
DKSSSRSNMSFDAIHENDNTDKIFVYFCADKNVSKASMKTFIGSMDKMGARRGIIIWSEK
MSPAAKKTLQEMQSEYHLEDFPESDLLVNITKHFLVPKHTVMKPEEKSALIKRYRLKETQ
LPRIMITDPVAKYYGLKRGQVMKIERASETAGRYITYRICM
NT seq 666 nt   +upstreamnt  +downstreamnt
atgtccaatgaagcgaaccgagaattagctagattatggcgtgtttcccgaaccgtccac
gagatggttagagatcgagggtacttgcttgccgattatgagatcaacgtttcgttcgaa
gagttcaaggacaggcatggtgcgactggatctgtcgaatggatgaaatgtccgcaagct
gacaaatcttcaagccgttccaacatgagcttcgatgccattcacgagaacgacaacacc
gacaaaatctttgtgtacttttgcgcggacaagaatgtcagcaaggcttctatgaagact
tttattggttctatggacaagatgggtgctaggcgaggaatcatcatctggagtgaaaag
atgtcaccggcggccaaaaagacattacaagaaatgcagtccgagtatcacctcgaagat
ttcccagaatccgaccttctcgtcaacatcaccaaacacttcctcgtccccaagcacacc
gtcatgaagcctgaagaaaagtctgctctcatcaagcgataccggttgaaggagactcag
ttaccacgtatcatgatcaccgatcccgtggccaaatactacggcttgaagagaggacag
gttatgaagattgagcgagcgagtgagactgctggacggtacattacttaccgtatttgc
atgtaa

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