Cryptococcus deneoformans B-3501A: CNBC0640
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Entry
CNBC0640 CDS
T01040
Name
(RefSeq) hypothetical protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cnb
Cryptococcus deneoformans B-3501A
Pathway
cnb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cnb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CNBC0640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cnb03021
]
CNBC0640
03019 Messenger RNA biogenesis [BR:
cnb03019
]
CNBC0640
Transcription machinery [BR:
cnb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CNBC0640
Messenger RNA biogenesis [BR:
cnb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CNBC0640
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Torus
zf-CCCH
zf-CCCH_4
zf-CCCH_2
zf_CCCH_4
zf-CCCH_3
zf-CCCH_9
zf-CCCH_DUS3L
Motif
Other DBs
NCBI-GeneID:
4934728
NCBI-ProteinID:
XP_776571
LinkDB
All DBs
Position
3:complement(<186850..>189038)
Genome browser
AA seq
675 aa
AA seq
DB search
MSVPLPSPSPLASAQDGPTGSTGDNSNTSASAKPIPRSRPTPIATAGSPEKASGTPASYK
YRPGAATSIGKSFNNDNWRDRSPAPSSAMPATVSGKGSERTVGFEKRDVSSLKGNGGSAL
SREREKEENKERENEKDKEGKEKSALSHVPCRFFKAGACTAGESCPFSHAAPDSAKREVC
QWFLKGNCKFGHKCALAHVRPGEPMSMDRKNKKAAQLEARERSGEVTTNGTRKATPTAIP
SASEESGASPVPIRSALSSSIQSNSTRIGSSPMREPFGPPSGALPNSPPAGFAHSYTRGH
PAFASSPNRPSPLSASFGAVGSGLASGSVPGPLSLKPGSNVLSSLRPPVTAAPTFSSSFS
HSSLAIERPSNAVATPLSASFAGEAPPLHRSIWARSDQPAEPLSPRRPIPRTIKPEAVFE
DDDDHGEEFLPSSLSDLLTPQERARRMSRRDSQDSSYSPSLAAFAAQAPVWGGERLAQSA
GPTMGQKGFLQSLWSADGEDVRKFQPTQVSSAQPQKQDFAFGPATAQASGPRTSLLTQQR
SPDSASPTSPIRLSSFSPPAAGPGEPFLIRNLGDPGSPSARALIEHAPGQSLPGGLANAL
SRLHLHGPRPTSSLTVVNPGGGGRVGGGLGAEWRLAEHEAEGSEDGDGGATPPNGAGVSH
SKREEHDEGLFAMDG
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgtccgttccactcccttctccctctcctctcgcctctgctcaggacggacctaccggg
agcacaggcgacaattccaacacgtctgcttctgcaaagcccatcccccgctcacggccc
actcctattgccaccgccggctcgcctgaaaaggccagcggtacccctgcctcatacaag
tatcgtcctggcgcagcgacttctattggcaagtcgttcaacaatgacaactggcgcgat
cgatcgcccgcacccagttccgccatgcccgctactgtaagtggaaaggggtctgagcga
acagtgggattcgagaagcgggatgttagctctttgaagggcaacggaggcagcgcgttg
agtagggagagagaaaaggaggaaaacaaggaaagggaaaatgagaaggacaaggagggc
aaggagaaatctgccttgagccatgtcccttgtcgattcttcaaggctggtgcttgtacc
gctggagaaagttgtccattctctcacgctgcgccggactccgcaaagcgggaggtatgt
cagtggttcttgaagggcaattgcaagtttggccacaagtgtgctcttgctcacgttcga
cctggagagccgatgtcgatggatcgaaaaaacaagaaagcggcgcagctcgaagcccga
gaacgaagtggtgaagtcactaccaacgggaccaggaaggctacccccactgctatcccc
agcgcctctgaagaatctggcgccagtcccgtccctatccgatcggcactttcctcctca
atccaatcgaattctactcgtattggatcttcccctatgcgagagccttttggtcctccc
tctggggctttgccgaacagccctcctgctggatttgctcactcttatacaaggggccat
ccagcctttgcttcttcgcccaaccgtccttctcctctttctgcaagctttggtgccgta
ggcagtggacttgcttccggcagcgttcctggacccttgtcccttaagccgggctcaaac
gtcctctcctctcttcgcccgccggtcaccgctgctcccacattctcctcttcattctct
cattcatcattggctatcgagcgtccttccaacgctgtcgccacacctctttccgcgtct
tttgctggggaagctcctccattgcaccgctccatttgggctcgttccgaccaacctgct
gaacctctgtctcctcgtcgaccgatcccccggaccatcaagcccgaagccgtttttgaa
gacgatgatgaccacggagaagagtttctgccttcctctctgtcagaccttctcaccccg
caagaacgggcccgccgtatgtctcgccgagacagccaagactcttcatactctccttcc
ctcgctgcatttgctgctcaagctcctgtatggggaggcgagcgtcttgcacagagtgca
ggccctaccatgggacaaaagggattcttgcagtctctctggtctgccgatggtgaagat
gtacgcaaattccaacctactcaagtctccagcgcccagccgcaaaagcaagactttgcc
tttggccccgctaccgcccaagcttccggtcctcgcacttcgttgctcacccaacaacga
tctcccgactctgcctccccgacgagccccatccgattatcttccttcagtcccccggcc
gctggtccaggcgagccattcttgattcgtaacctcggcgatcccggatccccttccgcc
cgcgcactgattgaacatgctcccggccaatctttacctggcggtctggctaatgccttg
tcgaggctacacctccacggaccccgaccaacgagctccttgacggtggtcaatcccgga
ggaggcgggagggtgggtgggggacttggtgcagagtggaggttggctgagcatgaggcg
gaggggagtgaagatggggatgggggagcgaccccgcctaatggtgcgggggtgtcgcat
tccaagagggaagaacatgatgaggggttgtttgcgatggacgggtaa
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integrated database retrieval system
