Cryptococcus deneoformans B-3501A: CNBC0740
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Entry
CNBC0740 CDS
T01040
Name
(RefSeq) hypothetical protein
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cnb
Cryptococcus deneoformans B-3501A
Pathway
cnb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNBC0740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnb03019
]
CNBC0740
03036 Chromosome and associated proteins [BR:
cnb03036
]
CNBC0740
Enzymes [BR:
cnb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CNBC0740
Messenger RNA biogenesis [BR:
cnb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
CNBC0740
mRNA degradation factors
5'-3' decay
Decapping complex
CNBC0740
Chromosome and associated proteins [BR:
cnb03036
]
Eukaryotic type
Gene silencing
piRNA pathway
CNBC0740
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
4934738
NCBI-ProteinID:
XP_776581
UniProt:
P0CQ81
LinkDB
All DBs
Position
3:<228934..>231152
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AA seq
625 aa
AA seq
DB search
MASSSTLLNDDWKQGLAAPPKDLRPQTEDVTATQGSRFEDFGLRRELLMGIYTAGFERPS
PIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQT
SQVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILDLGSKGIASLNKC
GVFVMDEADKLLSEDFMPVIEQTLALCPQERQVMLFSATFPWTVKEFKDQHMVQPYEINL
MDELTLKGVTQYYAYVEESQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKVTELGYS
CFYSHAKMQQAHRNRVFHDFRNGMTRNLVCSDLLTRGIDIQAVNVVINFDFPRTAESYLH
RIGRSGRFGHLGLAISLLTLEDRHNLYRIESELGTEIAPIPAVIDPVLYVAPAMVEEERE
SPPPKPAAIAAPPAQQQPQQRQRQHPPVPSHQAAQQSPAAAPVQQQQQQQQQQQQQQQQQ
QPQYQQAYGQGPPQPQALFQQQPNSSPAPAPLPSYSQQAPTQAQGPAPVQSPPPAPSTQP
QAPAQTPIQGQIPPTQPRAQQQGQQQPGQPGQAQGQSQPNRRPNTGGFRGNGRGQGHRGR
GRGRGGQPGQPGAGAGAGQSQQAQA
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcttcctcaacgttactgaacgacgactggaaacagggtcttgctgcccctcct
aaagaccttcgtccccaaactgaggacgttaccgctactcaaggatctcgtttcgaagat
tttggcttacgccgagaacttttgatgggtatctacactgctgggttcgaaagacctagt
cctatccaagagcaagctatccctatggcccttacaggacgagatattcttgctcgagcg
aagaacggtactggaaagactgcttctttcattattcctacccttaaccgaatcaacact
tctctatctcatattcaagcacttatcctagttcccacccgagaactcgcccttcaaaca
tcccaagtctgcaaaacccttggtgctcacatccctaacctccaagttatgattaccacc
ggcggtaccacattacgtgacgatatccttcgtcttcaacaacctgtccacattctcgtc
ggtacacccggtcgtatcttagatttgggaagcaagggaattgcgagtttgaacaagtgc
ggtgtctttgttatggatgaagcagacaagcttctcagtgaagatttcatgcctgtcatt
gagcagactttggctctgtgccctcaagagagacaggttatgctgttctctgctactttc
ccatggaccgtcaaggaattcaaggaccaacacatggttcaaccatacgaaatcaacctc
atggacgaacttactcttaaaggtgtcactcaatattatgcctatgttgaagaatctcag
aaagtccattgcctcaacaccctcttctctaagctccaaatcaaccaatctatcatcttc
tgcaactccaccaaccgtgtcgagctcctcgccaagaaggtcactgaacttggctattcc
tgtttctactcccacgcaaagatgcaacaagcccaccgaaaccgagttttccacgacttc
cgtaacggcatgactcgaaacttggtctgttccgacttgttgacaagaggtattgatatc
caggccgtgaatgttgtcatcaactttgacttcccaaggactgcagaatcatatcttcac
aggatcggccgatctggtcgttttggtcatttgggtcttgccatttctctcctcactctt
gaagatagacataacctgtaccgtatcgaatccgaacttggcacagaaattgcccctatc
cccgccgtcatcgatcctgtcctctatgtcgctcctgccatggtagaggaagagcgagaa
tcaccgccccctaagcccgctgccatcgccgctcctcccgctcagcaacaacctcaacaa
cgacaacgacaacaccctcctgtgccttcccaccaagctgctcagcagagccctgctgcc
gcgcccgtccaacaacaacagcagcagcaacaacaacaacaacaacaacaacaacaacaa
caacctcagtaccaacaggcatatggtcagggcccaccccagcctcaagcccttttccag
cagcagcccaattcttctcccgccccggcacctttgccttcttattctcaacaggctccg
actcaggcccagggacccgcgccagtgcaatctccacctcccgcgccttccactcagccc
caggcccctgctcaaacccccattcaaggccaaatccctccgactcagccccgagctcag
caacaaggccagcaacaacccggtcaaccaggtcaggcgcagggtcagagtcaacctaac
agacggccgaatactggtggctttaggggtaacggacgaggtcaaggacatagaggacga
ggtagggggaggggaggacagcccggtcagcctggtgccggtgccggtgcgggccagagc
caacaggctcaagcctaa
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