Cryptococcus deneoformans B-3501A: CNBC0850
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Entry
CNBC0850 CDS
T01040
Name
(RefSeq) hypothetical protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
cnb
Cryptococcus deneoformans B-3501A
Pathway
cnb03013
Nucleocytoplasmic transport
cnb03015
mRNA surveillance pathway
cnb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cnb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CNBC0850
09122 Translation
03013 Nucleocytoplasmic transport
CNBC0850
03015 mRNA surveillance pathway
CNBC0850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnb03019
]
CNBC0850
03041 Spliceosome [BR:
cnb03041
]
CNBC0850
03009 Ribosome biogenesis [BR:
cnb03009
]
CNBC0850
03012 Translation factors [BR:
cnb03012
]
CNBC0850
Enzymes [BR:
cnb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CNBC0850
Messenger RNA biogenesis [BR:
cnb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CNBC0850
mRNA cycle factors
Stress granule specific factors
CNBC0850
Spliceosome [BR:
cnb03041
]
Complex C
Other components
EJC/TREX
CNBC0850
Ribosome biogenesis [BR:
cnb03009
]
Eukaryotic type
90S particles
Helicases
CNBC0850
Translation factors [BR:
cnb03012
]
Eukaryotic type
Initiation factors
eIF-4
CNBC0850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Motif
Other DBs
NCBI-GeneID:
4934749
NCBI-ProteinID:
XP_776592
UniProt:
P0CQ73
LinkDB
All DBs
Position
3:complement(<258267..>259797)
Genome browser
AA seq
396 aa
AA seq
DB search
MAGVNVGDDKLVFESSEAVTVAPTFEALNLKEDLLRGIYAYNFEKPSAIQQRAIIPIIRG
RDVIAQAQSGTGKTATFSISMLQSIDTNLRETQALVLSPTRELAVQIQTVVLALGDYMNV
SCHACIGGTSVGEDIRKLEAGQQVVSGTPGRVFDMIRRRNLRTKDIKMLILDESDELLNK
GFKDQIYDIYRYLPPATQVVVVSATLPHDVLEMTTKFMTDPVRILVKRDELTLEGIKQFF
VAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTEKMREANFTVSSMHGEMVQKE
RDAIMAEFRGGQSRVLITTDVWARGIDVQQVSLVINYDLPTSRENYLHRIGRSGRFGRKG
VAINFVTVDDVRILRDIEQYYSTQIDEMPMNVAELT
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atggctggtgttaatgttggcgacgacaagctcgtattcgagtcttccgaagccgtcacg
gtcgctcctaccttcgaggctctcaacttgaaagaagatctcttgcgcggaatttatgct
tacaactttgagaaaccttccgccatccagcaacgtgcgatcatccccatcatccgtggt
cgagatgttattgcccaagcccagtctggtacgggtaaaaccgccaccttttctatctca
atgcttcagtccatcgacaccaacttgcgcgagactcaggctttggttctgtcccccaca
agggaattggctgtacagatccaaaccgtcgttctcgctctcggtgactacatgaacgtc
tcttgtcatgcttgtattggaggaaccagcgttggtgaagacattaggaagcttgaggct
gggcagcaggttgtcagtggtactcctggacgagtgtttgacatgatccgaaggagaaac
ttgaggactaaggacatcaagatgctcattctcgatgagtctgatgaactcctcaacaaa
ggtttcaaggaccaaatttacgacatctaccgatacctccctcccgccacccaagttgtc
gttgtctccgcgaccctccctcatgacgtcctcgaaatgactaccaagttcatgacagac
cctgtccgaattctcgtcaagcgtgatgaattgactcttgaaggaatcaagcaattcttc
gtcgccgtcgaaaaggaagactggaagtttgacacgctttgtgatttgtacgacactttg
acgattacgcaggcggtcattttctgtaacacccgacgcaaggtcgactggttgacagaa
aagatgcgagaggcgaactttactgtcagcagtatgcacggagaaatggtacaaaaggaa
cgagatgcgatcatggccgaattccgagggggacagagtcgagtattaattaccaccgac
gtctgggcccgaggtatcgacgtccagcaagtttctctagtcatcaactacgaccttcct
acttctcgtgaaaactacttgcacagaataggtcgaagtggtcgattcggcaggaaaggt
gtggcgatcaactttgtcactgttgatgatgtcaggattttgagagatattgagcaatat
tactctactcaaatcgacgaaatgcctatgaacgttgcggagctcacataa
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