Cryptococcus deneoformans B-3501A: CNBC2050
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Entry
CNBC2050 CDS
T01040
Name
(RefSeq) hypothetical protein
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
cnb
Cryptococcus deneoformans B-3501A
Pathway
cnb03018
RNA degradation
cnb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cnb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CNBC2050
09123 Folding, sorting and degradation
03018 RNA degradation
CNBC2050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnb03019
]
CNBC2050
03041 Spliceosome [BR:
cnb03041
]
CNBC2050
Messenger RNA biogenesis [BR:
cnb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CNBC2050
mRNA degradation factors
5'-3' decay
Lsm complex
CNBC2050
Spliceosome [BR:
cnb03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
CNBC2050
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
4934870
NCBI-ProteinID:
XP_776714
LinkDB
All DBs
Position
3
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AA seq
147 aa
AA seq
DB search
MLPLSLLTAAQGKPMLVELKNGVTFNGHLVECDTFMNVTLREVYQTSADGERFWKMKEMF
IKGNIIKYFRIADNILEQAAEEQDKARAANRARGGARGGRGGPGGARGGRGGPPGRGGPP
GRGGGPARGGFNQRGRGGPPRGGPPRP
NT seq
444 nt
NT seq
+upstream
nt +downstream
nt
atgcttccactctcacttcttacagccgctcaaggcaagccaatgctggtggaactgaag
aatggagttaccttcaacggtcacctagtggaatgcgacactttcatgaacgttactctt
cgagaggtttaccaaacttcagcggacggcgagcgattctggaaaatgaaggagatgttt
atcaagggtaacattatcaagtatttccgtatagcagacaacattctggaacaagcggct
gaggaacaagacaaggcccgagcagcgaacagagcgcgaggcggagctagaggtggacgg
ggcggaccaggaggtgctcgaggtggtcgaggtggaccacctgggcgaggcggacccccc
ggtcgaggaggtggaccggcacgtggcggattcaatcaaaggggtagaggaggaccacct
aggggcggaccgcctcgaccataa
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