Cryptococcus neoformans var. neoformans B-3501A: CNBC3240
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Entry
CNBC3240 CDS
T01040
Name
(RefSeq) hypothetical protein
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
cnb
Cryptococcus neoformans var. neoformans B-3501A
Pathway
cnb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNBC3240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnb03019
]
CNBC3240
Messenger RNA biogenesis [BR:
cnb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
CNBC3240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
4934989
NCBI-ProteinID:
XP_776833
LinkDB
All DBs
Position
3:879572..882843
Genome browser
AA seq
1016 aa
AA seq
DB search
MSKATSGEASVPSPTQSFSEYLPFLTAALDRLTTNAASLPDKTDLNFHRSLDRRFNKDVE
KTSERLLGMTERILDLIERSQKEARQGRDKGKTAKVMIRRRKLEDQDDIIDGYRGAVQGV
IDGLLEDAVRRSLPLCPCCSNISKDINLDELRGGKGKTAVTVKPALVAQAGKKVSESHYT
LTCYAHHIVQIPGPFTERLPANIIHASDLTKPQLLFHDAPDNARTSESWKPSLTTKPHAM
VPLGFKAPLDYELTSEEEMDPSKAALRREKEIRARTHPYYYETKHLPYPTSLFIDSKPVP
PQSFDETPFEFVDTPEKLHRMVEKLKQAKEIAVDLEHHDMRSYAGFTCLIQISTRESDWV
VDTLALRKEIQQDKFGDVFTDPTIVKVFHGADSDIIWLQRDFEIFVVNLFDTYSACVVLE
MPQRSLSALLQHYCNFEADKRYQRADWRIRPLPDGMLYYARSDTHFLLFIYDNLRNALLH
KSSRPSSPANCGTIVLDSARPNPQEAMREVLGKSADTALKMYERDSYDIVTGRGSGGWLA
AGKKWLPKGEIEQESGWVWRHLHDWRDRVAREMDESPFYIMPNNMLRDVSTADNTANLSR
IIRRDRAPIAAQYIPEITSIVVAAKEKFKEITAERAANPQIQEMEKIGAKEIGANDVKKI
PVAALAVPSVPLASTTSNIWDVAAKPTSTRTNAKSGLFGSAIKFSQPKHASGYITASKSG
QSALFGVTLDRASNQKSSSAALNLRERELSPGFLKVMESMRMDLHPKSMTSGSSEGDGKM
GLNPETVPFIPSNQRKTTATSSLEVRGKKPLGLTSESAHPQSGQKASSSTAYAPTSGITS
TLIKEMSPQKSSKSGTVDEGVVQVKKSKKQKKRERASTTDRAGDDSDSKKAKLGTDGDGE
FGAATPPAQAVIPSVELLNTVIVGEGGNANKSTASKNKKKKVKPEDIPAFDYASQPNLLD
QPHSVIAQDDAKKKKKKFKEARPSGAGIVEVPTFGARPARDLSQPKQGNKSGTFAR
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaagctacctccggagaagcatcggtaccttcgcccacccaatctttctcggaa
tatctaccttttttgactgccgctctagaccgtctcaccaccaatgccgcctctctgccc
gacaagaccgatctaaattttcatcgaagtctcgatagaaggttcaacaaggatgtagag
aagacaagcgagaggctactgggtatgactgagaggatactggatcttatcgaaaggagt
caaaaagaagccagacagggtagagataaagggaaaacagctaaagtgatgataaggcgg
aggaagttggaagaccaagatgacataatagatgggtatagaggtgcagtacagggtgta
atagacggtttgcttgaagatgcggtacgtcgatctttaccactttgcccttgctgttct
aatatctcaaaggatatcaaccttgatgaattgagaggaggcaaggggaaaacggctgtt
acagtcaagcctgccctggttgcccaagctggtaaaaaagtcagtgaatcgcattatacc
cttacttgttatgctcaccatatagtacagattcccggcccattcactgagcgtctgcca
gcaaatattattcatgcgtctgatctcaccaaacctcagcttctcttccatgacgctcct
gacaatgctcggacttctgaatcctggaagccgtctctaacgaccaagccccatgctatg
gtccctcttggattcaaggcacctctcgattatgagttgacctcggaagaagagatggac
ccgtcaaaggcagctctaagacgcgagaaagagattcgcgcccgaacgcacccctattat
tatgaaactaaacacttaccataccccacttcattgtttattgattcaaagcctgtaccc
cctcagagcttcgatgagacgcctttcgagtttgtcgacacgccggaaaaacttcatcga
atggttgaaaaactcaagcaggcaaaagaaatcgctgttgatctggagcatcacgacatg
cgaagctatgcaggtttcacttgcttgatccaaatttcgactagagaaagcgattgggtc
gtagacacgctggcgctcaggaaggaaatccagcaagataagtttggagacgttttcacc
gaccctactattgtcaaggtctttcatggtgccgatagtgatatcatctggctccaacgg
gatttcgaaatctttgtggtcaatttgttcgatacatatagcgcctgtgtcgtccttgaa
atgccacagcgatctctctcagcccttcttcagcattattgtaactttgaggccgacaaa
agatatcagcgggccgattggcgaattcgtcctttgccagatggcatgttgtattacgct
cgatctgacacccatttcctcctttttatctacgacaatctgcgcaacgcccttcttcac
aagtcttctcgtccttcttcgccagctaactgtggtactatcgtcctggatagcgccagg
cctaatcctcaagaagctatgcgcgaagtccttggcaagtctgctgatacggcattgaaa
atgtatgaaagagattcgtacgatatagtgacggggcgaggttctgggggttggctggct
gcagggaaaaagtggctacctaaaggagagattgagcaagagtctggctgggtttggaga
catttgcatgattggcgagatagagtggcgagagagatggatgaaagtcctttctatatt
atgcccaacaatatgttacgagatgttagtacggctgataataccgccaacctcagtcgt
ataatcagaagagatcgagctcctattgctgctcaatatattcctgaaattacatctatc
gttgtcgccgcgaaggaaaaattcaaggaaatcacggctgagcgagcagctaatcctcaa
attcaggagatggagaagataggagcgaaggaaatcggagcgaatgatgtgaagaagatc
ccggttgcggcactggccgttccatctgtacccctagcaagcaccacctcaaatatatgg
gacgtcgctgctaaacctacctctactagaacaaatgccaagtcaggtcttttcggctct
gccatcaaattctctcaaccgaagcatgcttcgggttatattaccgcttcaaaatcaggg
caatcagctttgttcggggtgacactagaccgagcaagcaatcagaaatcatcatctgct
gctttgaacctccgtgagagggaattatcccccggtttcctcaaggtcatggaatctatg
cgcatggacttgcatcccaaaagtatgacctcgggaagcagcgaaggcgatggtaaaatg
gggctgaaccctgaaaccgtgccgtttatcccttccaaccaaagaaagacgacggcgacg
tcttccttggaagtgagggggaagaaacccttaggtttgacgtcggagtcagcgcacccc
caatccggccagaaagccagctcctccaccgcatatgcaccaacttccggtatcacttca
acgctcatcaaagaaatgtctcctcaaaagtcatcaaaatctggaacagttgatgagggc
gttgttcaggtgaaaaaatcaaaaaaacaaaagaaaagagagcgagcttctacgaccgat
agagccggcgatgacagcgatagtaaaaaggcaaagttgggcactgacggcgatggagag
ttcggtgctgccacgccgccagctcaggccgtaatcccgtctgttgagcttttgaacaca
gtaattgttggggagggtggcaacgcaaataaaagtacagcttccaagaacaagaagaag
aaggtgaagcccgaagatataccagcatttgattatgccagccaacctaatttgttggat
caaccacactctgtgatcgcccaggatgatgcaaagaagaagaaaaagaagttcaaggaa
gcaaggccttcaggagctgggatcgttgaggtaccgacgttcggggcgagacctgcgaga
gacttgagccagcctaagcagggtaataagtctgggacctttgctagatag
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