KEGG   Cryptococcus deneoformans B-3501A: CNBD0780
Entry
CNBD0780          CDS       T01040                                 
Name
(RefSeq) hypothetical protein
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
cnb  Cryptococcus deneoformans B-3501A
Pathway
cnb03020  RNA polymerase
cnb03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cnb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CNBD0780
  09124 Replication and repair
   03420 Nucleotide excision repair
    CNBD0780
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cnb03021]
    CNBD0780
   03400 DNA repair and recombination proteins [BR:cnb03400]
    CNBD0780
Transcription machinery [BR:cnb03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     CNBD0780
DNA repair and recombination proteins [BR:cnb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CNBD0780
SSDB
Motif
Pfam: RNA_pol_Rpb4 EAD8 DUF4315 VMAP-M7
Other DBs
NCBI-GeneID: 4935467
NCBI-ProteinID: XP_776029
LinkDB
Position
4:<276580..>277330
AA seq 152 aa
MAALPAHHRRQQIQEEDATKLQFGDFAEGEALTLTEVATLLKAARQAPNVPPAPDNKVYQ
STTDYVNEFSNTTMDVSDSMRTLPAISALSARHGFLNKFEIAQIMSLRPERVEVAVALIP
SLERYAQGDENEAQLQSLLDDVRSMVRYGVQP
NT seq 459 nt   +upstreamnt  +downstreamnt
atggcagccttgcccgcccaccaccgccgtcagcagatccaagaggaagacgccacgaag
cttcagtttggagactttgcggaaggagaagctcttactttgaccgaggtagcgaccctc
ttgaaagctgctcgtcaagctcccaacgtccctcccgcgccggataacaaggtatatcag
tccacgactgactatgtcaatgagttttccaatactactatggatgtttccgatagtatg
cgaaccttacccgccattagtgcattatccgctaggcatggcttcttgaacaagtttgaa
atcgctcagatcatgtccttaagaccagaaagggtggaagtggccgttgccctcatacct
agtctggagaggtacgcgcaaggtgatgaaaacgaagcgcagctccagagtctactagat
gatgttcgttcaatggtccgttacggtgttcagccctag

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