Cryptococcus deneoformans B-3501A: CNBD1250
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Entry
CNBD1250 CDS
T01040
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cnb
Cryptococcus deneoformans B-3501A
Pathway
cnb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNBD1250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnb03019
]
CNBD1250
03041 Spliceosome [BR:
cnb03041
]
CNBD1250
03009 Ribosome biogenesis [BR:
cnb03009
]
CNBD1250
03016 Transfer RNA biogenesis [BR:
cnb03016
]
CNBD1250
Enzymes [BR:
cnb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CNBD1250
Messenger RNA biogenesis [BR:
cnb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
CNBD1250
Spliceosome [BR:
cnb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CNBD1250
Complex C
U4/U6.U5 tri-SnRNP related factors
CNBD1250
Ribosome biogenesis [BR:
cnb03009
]
Eukaryotic type
Pre-60S particles
Helicases
CNBD1250
Transfer RNA biogenesis [BR:
cnb03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
CNBD1250
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF3638
nSTAND3
Motif
Other DBs
NCBI-GeneID:
4935514
NCBI-ProteinID:
XP_776077
LinkDB
All DBs
Position
4:complement(<395612..>399217)
Genome browser
AA seq
1068 aa
AA seq
DB search
MSSSAPSDPPLSASSLTVKHKKRSSKDKSGTPSPRPSKTARLDQEDGADDPMDVLEEGKD
GRSRDPMEALEDGAMPKVEDEYEVQAEREVDAAKDFADVTAPGQEAKLKLVHQVRHQVAI
PPDYPYIPINQHKRKDPPARTYKFELDPFQFVSTSCIERNESVLVSAHTSAGKTVVAEFA
IATCLKEGRRVVYTSPIKALSNQKFREFTETFGDVGLMTGDVTINPEASCLVMTTEILRS
MLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPHTVRYVFLSATIPNSMEFAE
WICATHEQPCHVVYTDFRPTPLQHYLFPAGSEGIYLVVDEKSNFRDDNFQKAMAALAQGQ
GEDPANPSGGKGKKGKTKKGGALKGETSDIYKIVQLIMRRNLNPVIIFAFSKRECEDLAM
QMQKFDFNTPDEAATVAQVFESAIGSLSEDDKKLSQIEGILPLLKRGIGIHHGGLLPILK
EVIEILFQEGLIKALFATETFSIGLNMPAKTVVFTSVRKFDGKDFRNLSGGEYIQMSGRA
GRRGLDARGIVIMMCDEKIEPEAAKGMVKGQADRLDSAFHLGYNMIINLMRVEGVSPEYM
LEKCFFQFQNSMSVPVLEKQLKEAEAERDAIVIEREDEIEEYYELRQQLKERGQDFQAVI
THPAYCLRFLQAGRLVEIRDGDKDFGWGVVVAFNKVVNQRGRPPIWTDQDPPQKQYIVDV
LTRVETGASIPRDRSASEISPPSGADKGEVAIIACSLSTVQSISQYRVNLPKDLRGQQEK
NTAFRAVNEIKKRMPDGPPLLDPIKSMGISDKSFVDLVKKIALLENRLQTLEITKSPELP
RLYDLYDRKQKSIQSVKSLKRRINSVHDILQLEELKSRKRVLRRLGFTTADDVVEMKGRV
ACEISTGDELMLTEMMFGGTFGTLAPEQCAALLSCFVFQEKSEAKVRLKEELAVPLRTLQ
ETAKRIAKVSNESGIAIVEDEYVQSFKVEMMDVVLQWCKGAKFSQICEMTDVFEGSIIRC
FRRLQELIRQMGQAAHAIGNTELEEKFAKSMELLERPNTVVFNPSLYL
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcctctgccccaagcgacccgcctctctcagccagtagtctcaccgtaaagcat
aaaaagagatcctccaaagacaagagcggtactccttcccctcggcctagcaaaaccgct
cgtctcgatcaagaggatggcgcagacgatcctatggacgtattggaggaagggaaggac
ggacgatcgagggatcccatggaagccttagaagacggagcaatgcccaaagttgaagac
gagtatgaggttcaagctgaaagagaggtcgacgctgcaaaggactttgccgatgttact
gcccctggacaggaggccaagttgaagcttgtacaccaggtccgacatcaggttgctatt
cctcctgattacccctacatccctatcaatcagcacaagcgcaaagatccgccagcccgt
acctacaaatttgagctggaccctttccagtttgtgtctacttcctgtattgaacggaac
gagtctgttcttgtatcagctcacacttcagctggtaagacggtggtggctgagtttgct
attgcgacatgtttgaaggaagggaggcgagtggtctatacaagtcctatcaaggcgttg
tcgaaccaaaaattcagagaattcacggaaacatttggtgacgttggactgatgaccggt
gatgtgactatcaacccagaggcgtcatgtctggttatgaccactgagattttacggtct
atgctgtaccgtggttcggaagtcatgcgagaggttgcttgggtcattttcgacgaggtt
cattacatgcgagacaaggaacgtggtgtcgtttgggaagagacaatcatccttcttccc
cacaccgttcgctacgtcttcctctcggccaccattcccaactcgatggaattcgccgaa
tggatctgcgcaacgcatgagcagccttgccatgtcgtttacactgatttccgaccgact
ccgctccagcactaccttttcccagccggatcagaaggcatatatctagtcgtggacgag
aaaagcaatttcagggacgacaatttccaaaaagcaatggcagccttagcgcagggtcaa
ggagaagacccggccaatcctagcggcggaaagggcaagaagggcaagaccaagaaaggc
ggcgcattaaagggcgaaacatccgacatctataaaattgttcaactcatcatgcgacgc
aacctcaaccccgttatcattttcgccttttcgaaacgtgaatgtgaagatcttgctatg
caaatgcaaaaattcgatttcaacacacccgatgaagcggctaccgtcgcacaggtgttt
gaaagcgctatcggttccttatcggaggacgacaaaaaactttcgcaaatcgaaggtata
ttacctttgctcaaaaggggcattggaattcatcacggcggattgttgcctattctcaaa
gaagtgatagagatcttgttccaggaaggtttgataaaggctttgttcgcaactgaaact
ttctcaatcggtctaaacatgcccgccaaaacagtcgtattcacgagtgtgcgcaaattc
gatggtaaagatttcagaaacctttctggtggtgaatatatccaaatgtctgggcgagcc
gggcgtcgtggtctcgatgcgcggggtatcgtcatcatgatgtgtgatgaaaagatcgaa
cccgaggcagcgaagggcatggtcaagggccaagcggaccgtcttgattcagctttccat
cttggatacaacatgatcattaatttgatgagagttgaaggtgtgagccctgagtacatg
ctggaaaaatgcttcttccagttccagaattctatgagtgtaccagttttggagaaacaa
ttgaaagaggctgaggccgagagggacgccatcgtgattgagcgcgaggatgaaatcgaa
gagtattacgagctccgacaacaactcaaagaacgtgggcaagatttccaagctgtcatt
acacaccccgcgtactgcctccgcttccttcaggccggtagacttgtcgaaatccgcgac
ggtgataaggatttcggatggggtgtagtcgtcgcttttaacaaagtcgtgaatcaaaga
ggtcgacctccaatttggacggaccaggatccacctcagaagcaatacattgtcgacgtg
cttactcgagtcgaaacaggagcgtccatccctcgagaccgatcggcgtctgagatttcc
cccccttcaggtgccgacaagggtgaggtcgccatcattgcttgttctctctccactgtt
cagtctatcagccaataccgagtcaaccttcccaaagacttgcgcggtcaacaggagaag
aacactgccttcagggcagtcaatgagatcaagaagcgtatgcctgacgggccacctttg
ctcgacccgatcaagagtatgggcatttcggataaatcgtttgtcgatttagtcaagaag
attgcactattggaaaaccgacttcaaactctcgaaatcacaaagtctcctgagcttcca
cgtctctatgacctctacgaccgaaaacaaaagagcattcagtctgtcaaatccttgaaa
cgccgcatcaattctgtgcatgatatccttcagttagaagaactcaagtctcgtaaacgg
gtattgaggaggttgggtttcacaaccgccgacgacgtggtggaaatgaaggggcgtgta
gcgtgcgagatttccacgggagatgagttgatgttgacagagatgatgtttggtggcaca
tttggtacactagcacccgaacagtgtgctgcattgctgagctgtttcgtctttcaagaa
aagtcagaggcaaaggtgaggttaaaggaagagctcgctgtcccacttcgcactctccag
gagacggccaagagaatagccaaggtgtcaaacgaatcgggcattgcgattgttgaagat
gagtatgtgcagagcttcaaggtggaaatgatggatgtagtcttgcagtggtgcaaaggt
gccaaattctctcagatctgtgaaatgaccgacgtctttgaaggttccattatacgatgc
tttagacgattacaagaactcatccggcaaatggggcaagcagcacatgcgatcggtaac
acggagctggaagaaaagtttgcaaagagtatggagcttcttgagagacccaacactgtc
gttttcaacccttcattgtacttgtaa
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integrated database retrieval system
