Cryptococcus deneoformans B-3501A: CNBD1410
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Entry
CNBD1410 CDS
T01040
Name
(RefSeq) hypothetical protein
KO
K12590
exosome complex component RRP46
Organism
cnb
Cryptococcus deneoformans B-3501A
Pathway
cnb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNBD1410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnb03019
]
CNBD1410
Messenger RNA biogenesis [BR:
cnb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CNBD1410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Mpv17_PMP22
DUF1654
Motif
Other DBs
NCBI-GeneID:
4935530
NCBI-ProteinID:
XP_776093
LinkDB
All DBs
Position
4:complement(431397..432437)
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AA seq
308 aa
AA seq
DB search
MSSYRTCTTMATAGPSRRPDGRTPAQLRPLHLSIGELDRADGSARFAFGSNAVLASCSGP
IEVRLREELPDKATFEVNHRPLEGVGATPSRALVTTLETIFPPILSLEKHPRSLVQLVVQ
SLVPSTGRVVYGSVFGAEGVGAEQNTWPATDKDDYAYIPESRKDAARISPAAGYTFTARA
ASINASTLALLSAGTISILALPVAVALVVTTKGRVMLDPEADEEKQAKARLGFGWAWGAV
FGTANEENNMGVAGQNDGGAELVWIESEGSFTRQEWSEALQMSKTASKAILEFIRIQLDA
HLSSHQLS
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgagcagttatagaacttgcacaaccatggccaccgcaggccccagtagacgccccgat
ggcagaacgcctgcccagcttaggcctttgcatctgtccattggtgagctcgatcgtgca
gacggctcggctcgcttcgctttcgggtcaaatgccgtccttgcaagctgctctggtcct
atagaggtccgcctccgtgaagaactcccagacaaagccacttttgaagtaaatcatcgc
cctctcgagggcgttggtgcaactccttcccgagctcttgtcaccacccttgaaactatt
ttccctcccatcttatcattagaaaagcacccgagatcccttgttcagcttgtagtgcag
agcttagtgccatctacaggtagggttgtgtacgggtctgtctttggggcggaaggggtg
ggagcagagcagaacacatggccggcgacggataaggacgattacgcctatatcccagaa
agtagaaaagatgcagctaggatatctcctgcagcggggtatacttttactgctcgagcc
gcctctatcaacgcttcgacattagcactcctctccgcgggtacaatatcgatcttagca
cttcccgtcgctgtagccctcgtggtgactaccaaagggagagtgatgttggatccagaa
gccgatgaggagaagcaggcaaaggcgagactcgggttcggctgggcctggggtgcagta
tttgggacggccaatgaagagaacaatatgggagttgctgggcagaacgacggtggggca
gaacttgtttggatcgaaagtgaaggtagcttcactaggcaggaatggtcggaagcgctg
caaatgtccaaaacggcctcaaaggcaatccttgaattcattcgaatccaacttgacgct
catcttagttcacatcaactctcatag
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