Cryptococcus deneoformans B-3501A: CNBD5400
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Entry
CNBD5400 CDS
T01040
Name
(RefSeq) hypothetical protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cnb
Cryptococcus deneoformans B-3501A
Pathway
cnb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cnb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CNBD5400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cnb03041
]
CNBD5400
Enzymes [BR:
cnb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CNBD5400
Spliceosome [BR:
cnb03041
]
Complex C
Other components
Step II factors
CNBD5400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
S1
DEAD
AAA_22
AAA_30
AAA_19
EDC4_C
nSTAND3
PhoH
T2SSE
AAA_16
ATPase
Motif
Other DBs
NCBI-GeneID:
4935929
NCBI-ProteinID:
XP_775811
LinkDB
All DBs
Position
4:1506431..1510785
Genome browser
AA seq
1189 aa
AA seq
DB search
MMSTDKELYKLELLSLVSKVSQELFNHTKLQDKKLAEFVIALHEQSKTTEAFQKKLNEIG
ADFPEWFVKNLDRLIVTMHPKYKRKAAKMKASKQSGKSDDGQSVMEEQKQLQARKFPGLS
MPDQDWKPAEKYVDERAAKEPHETLPESLSTSDTMAQLESIASRRNRPAAEDFLDGEPAA
KKLRSATSSGHDGSSGRRGGYEGGSFRDSFRHGRPTVDERPVLYKIYNGTIANITDFGAF
VTLDGVERKIDGNQRSNEGLIHVSNITNGRVNSPRDFLKRGQRVKVKVMAVSPKIGLSMK
DVDQNTGDDLSPHLTVKTAEEAAVQQQRMSSYAASGSNSTPLLAVDERQRSSAKRLSSPE
RFEIKQLIASGAVSAADYPDLDEDFSTNVANHEIEEDIDVEVNEVEPAFLSGQTKVTLEL
SPVKIIKAPDGSLNRSALAGASLAKERRDLKRLEANEQADAETREINQPWLDPMANQNER
QFASDIKGNLLGQKAAQMPAWKAANKVVSYGKITSMSIQEQRRSLPIYKLREQLVAAIRD
NQILVVVGDTGSGKTTQMAQYLAEEGFLEKGRLGCTQPRKVAAVSVAKRVAEEVGCRLGA
EVGYTIRFEDMTSPETKIKYMTDGMLLRELLVDPDCSKYSVIMLDEAHERTIATDVLFGL
LKKACKRRPDLKLICTSATLDAAKFATYFWGCPIFTIPGRTYPVETLYTKEPEPDYLEAS
LITILQIHLMEPAGDVLLFLTGQEEIDTACEVLYERVKALGPQVPELLILPVYAALPSEM
QSRIFEPAPPGARKVVIATNIAETSITIDGIYYVIDPGFAKQNAYDPKLGMDSLIVTPIS
QAQARQRAGRAGRTGPGKCYRLYTEVAYRNEMLPNPIPEIQRTNLASTILTLKAMGINDL
ISFDFMDPPPAATMLTALEQLYALGALDDEGLLTRIGRKMADFPLDPPLSKMLIKSVDYG
CSEEALTIVAMLQAGGQVYYRPKDKQTQADAKKAKFHQPEGDLLTLLAVYNGWKNSKFSN
PWCFENFIQTRAMKTAQDVRKQLIGIMDRYKHDLVSCGTNYNRVRMAICSGFFRNAAKKD
PTEGYKTLVEGTPVSIHPSSALFQRPPEWCVYYELVLTAKEYMHQVTVIEPKWLSEVAPT
FFRIADQNKISKRKASEKIEPLFDRFAADKDDWRLSKQKKAARSSQTFG
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgatgtccactgataaagagctgtataagctcgagcttctctcgcttgtatcgaaggtg
tcccaggagctcttcaaccacactaagcttcaagacaaaaaactagctgaatttgtgata
gcacttcacgaacaaagtaaaacaactgaagcgttccagaagaagctcaatgagatcggc
gcagactttcccgaatggtttgtcaagaatctcgacagactgatcgttaccatgcacccc
aagtataagaggaaagcggccaagatgaaagcctcgaagcagtcaggaaagtctgacgat
gggcaatctgtcatggaggagcagaagcaacttcaggcgagaaagtttcccgggttgtcc
atgcctgaccaagattggaagcctgccgagaaatatgtcgacgaaagggccgcaaaagaa
ccgcacgagacccttccggaatcactttcgaccagtgatactatggcccagttagagtcg
atcgcgtctcgccgaaatagaccggcggctgaggatttcttggacggggagcctgctgcg
aagaaattgcggagtgccactagcagtggtcatgacgggtcgtcaggacgacggggcgga
tatgaaggaggcagctttagagattcttttagacatgggcgtccgacggttgatgagagg
cccgtactctacaagatctacaatggcactatcgcgaatatcaccgattttggggctttt
gtaactttagatggcgtagaaagaaaaatcgatggtaatcaaaggtcaaatgaaggctta
atccatgtatcgaatattacaaatggaagagttaactcaccccgagacttccttaaacgg
ggtcaacgagtcaaagtcaaagttatggctgtcagtcctaagatcggtctaagtatgaag
gatgtcgatcagaacactggtgatgatctttccccacatcttactgtcaagactgctgaa
gaggccgcagtgcagcagcaaaggatgtcatcttatgcagctagtggaagtaacagcacc
cccctcttagcagttgatgagcggcagcgatctagtgcaaagagattatcaagtcccgag
cggttcgagattaaacagctcatagccagtggggccgtatctgcagcagattaccctgat
cttgatgaagacttcagcactaacgtcgccaatcatgagattgaagaagacattgatgtc
gaagttaatgaagtcgaaccggcgttcttatcgggccagaccaaagtcaccctggaactc
tctcctgttaaaatcatcaaagcaccagacggctcacttaaccgttctgctttagcaggc
gcttcattggcgaaagaaagacgtgatctcaaacgtttggaagcgaatgagcaggccgac
gcagagaccagagagatcaaccagccttggcttgatcccatggctaaccaaaacgagcgg
cagtttgcatcagacatcaaagggaacctgcttggccaaaaggccgctcaaatgcctgcc
tggaaagctgcaaataaagttgtgtcgtatggcaagatcacttctatgagtatacaagaa
caaagacgcagtctgcccatctacaaattacgggagcagttggtcgccgctattcgagat
aatcaaattcttgttgtagttggagacactgggtctgggaagactactcaaatggcgcaa
tacctcgctgaagagggattcctcgaaaaagggcgtttgggatgcactcagccgcgaaag
gttgctgctgtttctgtcgctaagcgtgttgcagaggaagtgggttgtcgactcggggct
gaagtcggctacactatccgttttgaagatatgaccagtcctgagaccaagatcaagtac
atgaccgatggtatgcttcttcgtgaattgctggttgatccggattgctcgaaatactct
gtgattatgcttgatgaagcgcacgagcgcacaatcgcaactgacgtcctcttcggtctc
ctgaaaaaggcttgcaaacgacgcccagatcttaagctaatatgtacttctgccacactg
gatgctgccaagtttgcgacctacttctggggttgcccaatctttaccattcctggccga
acataccccgtcgagacactttatacaaaggagcctgagcccgactacctggaggcctct
ctcatcaccatccttcaaatccatctcatggaaccagcaggcgatgttcttcttttcctt
acaggtcaagaggagatcgatacagcatgtgaggttctatatgagcgagtcaaggcattg
ggtcctcaagttccagagcttctcattttaccggtatatgctgcacttccctctgagatg
cagtcacgcatctttgagccagccccacctggtgcacgtaaggtggtcatcgcaaccaac
attgcagagaccagtatcaccattgatggcatatactatgtcattgatcctggttttgca
aagcagaatgcttatgacccaaagcttggtatggattctttgatagtcactccgatctcc
caagcgcaagcacgtcaaagagctgggcgtgccggccgcacgggccctggcaagtgctat
cgtctctacacagaggtcgcctaccgtaatgaaatgttacccaacccaattcctgaaatc
caacgaaccaatcttgcatctactattctcactctgaaagcaatgggaatcaacgatctt
atcagtttcgatttcatggatcctcctccagcagcaaccatgttaacagctttagaacaa
ctttatgctcttggtgccttggatgatgaagggctgttgaccaggattggtcgaaaaatg
gcagattttcctctagaccctcctttatccaagatgcttatcaaatctgttgattatgga
tgttctgaagaagccttgacaattgtggctatgctgcaagctgggggccaagtatactat
cgacccaaggacaaacagactcaagcggacgccaaaaaggctaagtttcatcagccagaa
ggtgaccttcttacattacttgctgtctataatggatggaaaaactcgaaattcagtaac
ccatggtgcttcgaaaactttattcaaacacgagccatgaaaacagcgcaagatgtaaga
aaacagttgattggaattatggatagatataaacacgatcttgtgtcatgtggtaccaat
tacaaccgagtacggatggccatttgctctggattcttcagaaatgctgccaagaaggac
cccactgaaggttataagacacttgttgagggtacacctgtcagcattcatccctcaagt
gccttgttccagcgaccccctgaatggtgtgtgtattatgaactggttcttactgccaag
gaatacatgcaccaggtcactgttattgaaccaaaatggctttctgaagtggcaccaaca
ttcttccgtattgctgatcaaaacaagattagcaagcgtaaggcatctgagaagattgag
cctctgtttgatcgttttgctgcagataaagatgactggcgtctcagcaagcagaagaaa
gcagctcgctcttcacagacttttggttga
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integrated database retrieval system
