Cryptococcus deneoformans B-3501A: CNBE5120
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Entry
CNBE5120 CDS
T01040
Name
(RefSeq) hypothetical protein
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
cnb
Cryptococcus deneoformans B-3501A
Pathway
cnb03020
RNA polymerase
cnb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cnb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CNBE5120
09124 Replication and repair
03420 Nucleotide excision repair
CNBE5120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cnb03021
]
CNBE5120
03400 DNA repair and recombination proteins [BR:
cnb03400
]
CNBE5120
Transcription machinery [BR:
cnb03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
CNBE5120
DNA repair and recombination proteins [BR:
cnb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
CNBE5120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_L
RNA_pol_A_bac
MZB
Pico_P2A
Motif
Other DBs
NCBI-GeneID:
4936524
NCBI-ProteinID:
XP_775239
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All DBs
Position
5:complement(1389907..1391346)
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AA seq
377 aa
AA seq
DB search
MNGYYDPQQHQSTNIEIPQGPTNQPRLLLRNLNETDATFHLSGVELAYANSLRRVMMADV
PTIAIDQVLFMQNTTPLADEMIAHRLGLIPLISRNVSKGLRYTRDCDCDEGCYYCMVTLR
LKVTFSGNDGEQFMRVTSDMLEVVPSPGGPPPPNPYGPPPELSEEDRIIINNRDPEMGQP
IGKGNPTVPPILIAKMGKGQEIDVLCKAYKGIAKHHAKWSPLSTVAFEYDPYNKLRHTTH
WFETDERAEWPLSSNAAFETPPNPAEPFDYNAVPSTFYFSAESVGSIPVRSVVEQGLDLL
IEGLANVVLGVQKEIGGEEEEGEDGAAADGVVGDGMGVGMGGGLVEPNIPAGIGQDQMAM
AGGYGGYGSQQGYGGSW
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atgaacggatactacgacccccaacaacaccaatcgactaatatcgagatcccgcaaggc
cctacgaatcaaccacgtcttctccttcgtaacctcaatgagacggacgccactttccac
ctttctggcgtggagctcgcctatgcgaacagtctgagaagagttatgatggccgatgtg
cctactatcgccatcgatcaagtcctctttatgcaaaatacaacgcctttagcagacgaa
atgattgcccaccgtttaggtctcattccccttatctcccgtaacgtctcgaagggactt
cgctacactcgagactgtgactgtgacgaaggatgttattactgtatggtaactttgaga
ttaaaggtgactttcagtgggaatgatggagagcagttcatgagggtgacaagtgatatg
ttggaagtggtcccgagtcctggtgggcccccgccccccaatccttatggacctccacct
gaactttcagaagaagatcgcatcatcatcaacaatcgtgatcctgaaatgggccagcct
attggaaagggaaatcccactgtacctccgatattgatcgcaaagatgggcaaggggcag
gagattgatgttttatgcaaggcttataagggtatcgcgaagcaccatgccaaatggtct
cccttatcaactgtagcctttgagtatgacccctataacaaacttcgtcatacaacgcat
tggttcgagactgatgaacgtgcggaatggcctctctcttcaaatgccgcgtttgaaacc
cctccaaatcccgcagaaccattcgactacaatgcggtcccgtccacattctacttctcc
gccgaatctgtcggttccatccccgtccgttccgttgtcgaacaaggtctcgaccttctg
atagagggcctcgcaaatgtcgtgttgggcgtacagaaagagattggtggcgaagaggaa
gagggggaagatggagcggccgcagatggagttgttggggatgggatgggcgtgggcatg
ggagggggtttggtagaaccgaatatacctgcggggataggtcaagatcagatggccatg
gcaggtggatacggagggtacggatctcagcagggttatggaggttcatggtag
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