Cupriavidus necator N-1: CNE_1c05530
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Entry
CNE_1c05530 CDS
T01564
Symbol
rhlE1
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cnc
Cupriavidus necator N-1
Pathway
cnc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNE_1c05530 (rhlE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnc03019
]
CNE_1c05530 (rhlE1)
Enzymes [BR:
cnc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CNE_1c05530 (rhlE1)
Messenger RNA biogenesis [BR:
cnc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CNE_1c05530 (rhlE1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
AEI75918
UniProt:
G0EW26
LinkDB
All DBs
Position
1:558294..559892
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AA seq
532 aa
AA seq
DB search
MSFSELGLSDKIVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML
QMLSDSAARGANGAQRPARLPVRALVLTPTRELAAQVEESVRNYGKYLRLRSMVMFGGVG
INPQIEQLKRGVEIVVATPGRLLDHVSQRTIDLSQVELLVLDEADRMLDMGFIHDIRKIL
NVLPAKRQNLLFSATFSDDIRALADRLLNNPASIEVARRNTTAETVDQRVYPVDRERKRE
LLAHLVRQHDWHQVLVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALSEFKSG
TLRLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDEI
ALLRDIERLIKRKLEQTVLPGFEVDPSIAPEPIQKGRQQRGGGGQGQGQGQGRGRAQARP
AGNEGEGAQRQRPAREAQAAPRQAQGGQPRTRAAEGGQRGNGAANGNRGGQPAGGARNPA
PRRDGQEPARQQRTAAQPARQPHDAAPAPAPARNRRPAPQAALLGGNRKPAR
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgtctttttctgaactcggcttgtccgacaagattgtgcgtgccgtggccgaacagggc
tacaccacgccgactcccatccaggcccaggcaatccccgccattctcaagggcggtgac
ctgctcgccggcgcgcagaccggcaccggcaagaccgccggctttacgctgccgatgctg
cagatgttgtccgactccgcggcgcgcggcgccaatggcgcgcagcgtccggcccgcctg
ccggtgcgcgcactggtgctgacgcccacgcgcgaactggccgcccaggtcgaagagagc
gtgcgcaactacggcaagtacctgcgcctgcgttccatggtgatgttcggcggcgtcggc
atcaacccgcagatcgagcagctcaagcgcggcgtcgagatcgtcgtggccacgcccggc
cgcctgctggaccacgtgtcccagcgcaccatcgacctgtcgcaggtggaactgctggtg
ctcgatgaagccgaccgcatgctcgacatgggcttcatccacgatatccgcaagatcctc
aacgtgctgccggccaagcgccagaacctgctgttctcggcgacgttctcggacgatatc
cgcgcgctggccgaccgcctgctgaacaacccggcctcgatcgaggtggcgcggcgcaat
accacggccgagaccgtggaccagcgcgtctacccggtggaccgcgagcgcaagcgtgag
ctgctggcccacctggtgcgccagcatgactggcaccaggtgctggtatttacgcgaacc
aagcacggcgccaaccgcctggccgagcaactgaccaaggacggcctgtcggcactggcg
atccatggcaacaagagccagtcggcgcgcacgcgcgcgctgtcggaattcaagtcgggc
acgctgcggctgctggtggcaaccgatatcgccgcgcgcggcatcgacatcgaccagctg
ccgcacgtggtcaacttcgacctgcccaacgtgcccgaggactatgtgcaccgcatcggc
cgtaccggccgcgccggcgccgagggcgaagcgatctcgctggtctgcgtggacgagatt
gcgctgctgcgcgatatcgaacgcctgatcaagcgcaagctcgaacagaccgtgctgccg
ggcttcgaggtcgacccgagcattgcgcccgagccgatccagaagggccgccaacagcgt
ggcggtggtggccaggggcaaggacaaggccagggccgcggacgcgcccaggcgcgtccg
gccggcaacgaaggcgagggcgcccagcgccagcgcccggcgcgcgaagcgcaggctgcg
ccgcggcaagcccagggcggccagccgcgcacgcgcgctgccgaaggcggccagcgcggc
aacggcgcggccaacggcaaccgtggcggccagcccgccggcggcgcgcgcaatcccgca
ccgcgccgcgacggccaggagccggcgcgccagcagcggactgcggcgcaacccgcacgc
cagccgcacgacgcggcaccggcaccggcaccggcgcgcaatcgccgtccggcgccgcag
gccgcgctgctcggcggcaaccgcaagccggcgcgctga
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