Cupriavidus necator N-1: CNE_1c23020
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Entry
CNE_1c23020 CDS
T01564
Name
(GenBank) ATP-dependent exoDNAse beta subunit
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
cnc
Cupriavidus necator N-1
Brite
KEGG Orthology (KO) [BR:
cnc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cnc03400
]
CNE_1c23020
Enzymes [BR:
cnc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CNE_1c23020
DNA repair and recombination proteins [BR:
cnc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
CNE_1c23020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
PDDEXK_1
AAA_22
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AEI77635
UniProt:
G0F0K6
LinkDB
All DBs
Position
1:complement(2385248..2388868)
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AA seq
1206 aa
AA seq
DB search
MTPHDPHHVQPYQRDGEPVSEAEFTRAACDPARSVVVEACAGSGKTWLLVARLVRLLLAG
AAPHEILAITFTRKAAEEMRDRLLEVLAQLSRDSDDDVIAALVQRGLTPDAAREALPRAR
RLHAQVLAAPGRMAIDTFHGWFGTLLRGAPLASGIVPGAALREDALRMKREAWAPVWRAL
ATPQYTDLREAWETLVDTVGDFQARALLDAMFHARSEWWAMQEGGDPLQALSDCLGEDAQ
GDVLLQALADEGWRDACESLALRLGAAGKTEQTHAARITDALMAITAWREAGAAPGKPAE
RVFAQLRAAFFTTTGGPRSLRRTAALVKAAGGEGMVDALLDEHASICAMLDDISARCCEA
AVLAINRALFCIGDALLTRYQRHKDEQRAMDFADLEWQAARLMSDEETATYLQVRLDARY
RHLLLDEFQDTNPLQWRILQGWLAGYAGLGERPTVFLVGDPKQSIYRFRRADARLFGAAG
EMLRDAFGATVLRTNRTRRNRAEVLDWVNAVFDSARAEGRYPLYATQTTALAGGNGPVWL
LPLVEPEDKADDKAAEAVDGAAEDEPAQAASAHRDTLLQPRRQAGDSLRLEEGRRVAAWL
RLVRDTVPVHEGGEQRPARWSDMHLLVRRKTHLADYERALREAGIPCLSPRRGGLLATLE
ALDLSALLAFLMTPESDLDLAHVLKSPLVGATDDDLLALARIEGEGSWWARIESGGLPEH
VSDALREGVQRLRQWLRVAPHQPVHDLIDQIFHGGEVRRRYAEAAPPDIREQVLANLDAF
LKLSLDLDGGRYPSLPKFIDELQEIRRGDEGESPDEGGMGESAEDVEPAEDDPAFAGLDA
VHILTVHAAKGLEAPFVVLLDANHSEPAADRGGILVDWPPSSPVPRHFSAYSKRSERGLA
RAPMFESEAALGERENWNLLYVAMTRAQQGLLVSGVKGRANRSGSGEGNAEIAGSWYVRL
QAAGVGEMVPAYPGELADAQDQAQMPARLSEPVRFTDFRLRYRDAVDARQEIGFEEEGEA
EAEDESDGIVFNAAAARHGELVHALLERLTRYPDAFAGVPGIDTVLRWFPLTGAHTGPAR
QAWRQQVAEALEAVAAMLRAPALAPLLGAGDVRSARNEVELYDARGRLLRIDRLVEFDDR
VVIVDYKLRLLPQEHAAYRAQLGRYAAAIAPMFPGKRIEAGVATADGEWIPAERLAPPMP
QQGSLF
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgacgcctcacgatccgcaccacgtccagccttaccagcgcgacggcgagcccgtctcc
gaggccgaattcacgcgcgccgcctgcgatccggcacgctccgtcgtggtggaagcctgc
gccgggagcggcaagacctggctgctggtggcgcggctggtgcgcttgctgctggccggt
gccgcgccgcacgagatcctggccatcaccttcacgcgcaaggccgccgaggaaatgcgc
gaccgcctgctggaggtgctggcacagctgtcgcgcgacagcgacgacgacgtgatcgcc
gcgctggtgcagcgtggcctgacgcccgacgccgcacgtgaggcgctgccgcgtgcgcgg
cgcctgcacgcgcaggtgctggccgcgcccgggcgcatggccatcgataccttccacggc
tggttcggcacgctgctgcgtggtgcaccgctggcctccggcatcgtgccgggcgcggcg
ctgcgcgaagatgcgctgcgcatgaagcgcgaagcctgggccccggtctggcgcgcgctg
gcgacgccgcaatacaccgatttgcgcgaagcctgggaaacgctggtcgataccgtgggc
gacttccaggcacgcgcgctgctggacgcgatgttccatgcccgcagcgaatggtgggcg
atgcaggagggcggcgacccgctgcaggcgctgtccgactgcctgggcgaagacgcccag
ggggacgtgctgctgcaggcgctggccgacgaaggctggcgcgatgcctgcgagtcgctg
gcgctgcgcctgggcgcggccggcaagaccgagcagacccacgccgcccgcatcaccgat
gcgctgatggcgatcaccgcgtggcgcgaagcgggcgcggcgcccggcaagcccgccgaa
cgggtgttcgcgcagttgcgcgccgcgttcttcaccaccaccggcggcccgcgttcgctg
cggcgcaccgcggcgctggtcaaggccgccggcggcgaaggcatggtcgatgcgttgctg
gacgagcatgcatcgatctgcgccatgcttgacgacatcagcgcgcgttgttgcgaagct
gcggtgctggcgatcaaccgagcgctgttctgcatcggcgatgccttgctgacgcgctac
cagcggcacaaggacgagcagcgcgcgatggacttcgctgacctggaatggcaggccgcg
cgcctgatgtcggacgaagagaccgccacctacctgcaggtgcggctcgacgcgcgttac
cgccatctgctgctcgacgagttccaggacaccaacccgctgcagtggcgcatcctgcag
ggctggctggccggctacgcgggcctgggcgagcggccgacggtgttcctggtgggcgat
cccaagcagtcgatctaccgcttccggcgcgccgatgcacggttgttcggcgcggccggc
gagatgctgcgcgatgcgttcggcgccaccgtgctgcgcaccaaccgcacccggcgcaac
cgtgccgaagtgctggactgggtcaacgccgtgttcgacagcgcgcgcgccgagggccgc
tatccgttgtacgcgacccagaccacggcactggccggcggcaacggaccggtctggctg
ctgccgcttgtggagcccgaggacaaggccgacgacaaggccgctgaagccgtggacggc
gccgccgaagacgaaccggcgcaagccgcctcggcccatcgcgacacgctgctgcaacct
cgccggcaggccggcgattcgctgcgcctggaagaaggccggcgcgtggccgcgtggctg
cgcctggtgcgcgacaccgtgccggtccatgaaggcggcgagcagcgccccgcacgctgg
agcgacatgcatctgctggtgcgccgcaagacccatctggctgactatgagcgcgcgctg
cgcgaggccggcatcccgtgcctgagcccgcgccgcggcggcctgctggccacgctcgag
gcgctggacctgtcagcgttgctggcgttcctgatgacgccggaatcggacctggatctc
gcgcacgtgctgaagagcccgctggtgggggcgactgacgacgacctgctggcgctggcc
cggatcgaaggcgagggcagctggtgggcacgcatcgagtcaggcggcctgcccgaacac
gtatccgatgcgctgcgcgaaggcgtgcagcgcttgcgccagtggctgcgcgtcgcgccg
caccagccggtgcatgacctgatcgaccagatcttccacggcggcgaagtgcggcgccgc
tatgccgaggccgcgccgccggatatccgcgaacaggtgctggccaacctcgatgccttc
ctgaagctgtcgctggacctcgacggcgggcgctatccgagcctgccgaagtttatcgac
gagctgcaggaaatccgccgcggggacgagggcgaaagccccgacgaaggcggcatgggc
gagagcgccgaagacgtggagccggccgaggacgatccggcgtttgccggcctcgacgca
gtccatatcctgaccgtgcatgcagccaagggcctggaggcgccgttcgtggtgctgctc
gatgccaatcacagcgagccggccgcggaccggggcggcatcctggtcgactggccgccg
tcgtcgccggtgcctcggcatttctcggcctacagcaagcgcagcgagcgcgggctggcg
cgggcgccgatgttcgagtcggaggcggcgctgggcgagcgcgagaactggaacctgctg
tacgtggccatgacgcgcgcgcagcagggcctgctggtcagcggggtcaagggccgggcc
aaccgcagcggttcgggcgagggcaatgcagagatcgccggcagctggtatgtgcggctg
caggctgcaggcgttggcgagatggtgccggcctatccgggcgagctggccgatgcgcag
gaccaggcccagatgcccgcgcgcctgagcgagccggtgcgctttaccgacttccggctg
cgctatcgcgatgcagtggatgcgcgccaggagatcgggtttgaagaagagggcgaggca
gaagccgaagacgagtccgacggcatcgtcttcaacgccgcggccgcccgccacggcgag
ctggtgcatgccttgctggaacgcctgacgcgctatcccgacgcctttgccggcgtgccg
gggatcgacaccgtattgcgctggttcccgctgacgggcgcgcacaccgggccggcacgg
caggcgtggcggcaacaggtggcagaagcgctggaggcggtggctgcgatgctgcgcgca
ccggcgctggcgccgttgctgggggcaggggacgtccgcagcgcgcgcaatgaagtcgaa
ctctatgacgcgcgcggccggctgctgcgtatcgaccggctggtggaattcgacgaccgc
gtggtgatcgtcgactacaagctgcggctcctgccgcaggagcatgccgcctaccgcgcg
cagctgggccgctatgcggccgcgattgcgccgatgttcccgggcaagcgtatcgaggcc
ggcgtggccactgcggacggcgaatggattcccgccgagcgcctggcgccgccgatgccg
cagcagggctcgctgttctga
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