KEGG   Chitinophaga caseinilytica: WJU22_07935
Entry
WJU22_07935       CDS       T11999                                 
Name
(GenBank) RNA polymerase sigma-70 factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
cnca  Chitinophaga caseinilytica
Pathway
cnca02020  Two-component system
Brite
KEGG Orthology (KO) [BR:cnca00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    WJU22_07935
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cnca03021]
    WJU22_07935
Transcription machinery [BR:cnca03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     WJU22_07935
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r4 Sigma70_r2 Sigma70_ECF HTH_23 HTH_24 HTH_28 HTH_11 HTH_38 GerE PF0610-like_N TnsD Lentiviral_Tat HTH_10 HTH_AsnC-type Nod1 DUF5617 Xre-like-HTH HTH_Tnp_ISL3 HTH_40 HTH_20 DUF7646 DUF2774 HTH_3 Trp_repressor DUF6362
Other DBs
NCBI-ProteinID: WZN48102
UniProt: A0ABZ2Z8W4
LinkDB
Position
1851464..1852174
AA seq 236 aa
MTRWPAHPGNVPLAQAKRRTVVQSNREKCRKSPYFYCLMPAYSTYTDEQLYELLQGDDQD
AFTEIYQRYWKTLYQRARAMLNDGPLAQDVVQEVFISLWNRRADVRIEKIGAYLHQAVRF
QELKALHRLQSDAAFYDRLASITQDLIDHEPLLYNEMESIVRNLLSRLPEDQRNILRLSR
EEGLTYREIAEKLGISIKTVEKKISLSLRAIRKGMDGSFPLLLSFALVAPAGVAHL
NT seq 711 nt   +upstreamnt  +downstreamnt
ttgacccgctggcccgcccatcccggaaatgtgccgctcgcgcaggcgaagcgccgtacg
gtcgtacaatccaaccgcgaaaaatgccggaaaagtccgtacttttattgcttgatgccg
gcatattcgacatatacggacgagcagttatatgaattgctgcagggggacgatcaggac
gcatttacggagatttaccaacgctactggaagacgctctaccagcgggcccgtgccatg
ctgaacgacgggccgctggcgcaagacgtggtgcaggaggtgttcatttccctctggaac
cgccgtgcagacgtccggatcgaaaaaatcggcgcctatctgcaccaggccgtccgtttc
caggaacttaaagctctgcaccgcctccagtcagatgccgctttctacgaccggctggca
tccatcacccaagacctcatcgatcacgagcccttgctttataacgagatggaaagcatc
gtccgcaacctcctcagccgcctgcccgaagatcagcgcaacatcctgcgcctgagccgg
gaagaggggctgacgtaccgggagatcgcggaaaaactggggatttccatcaaaaccgtc
gaaaagaaaatttctttgtcgctccgcgccatccgcaaagggatggacggttcgttcccc
ctgctcctctctttcgcgctggtggcccctgccggcgttgcgcacctgtaa

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