KEGG   Cryptococcus deneoformans JEC21: CNA05400
Entry
CNA05400          CDS       T00243                                 
Name
(RefSeq) U6 snRNA-associated sm-like protein lsm8, putative
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
cne  Cryptococcus deneoformans JEC21
Pathway
cne03018  RNA degradation
cne03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cne00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CNA05400
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CNA05400
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cne03019]
    CNA05400
   03041 Spliceosome [BR:cne03041]
    CNA05400
Messenger RNA biogenesis [BR:cne03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CNA05400
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     CNA05400
Spliceosome [BR:cne03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    CNA05400
SSDB
Motif
Pfam: LSM DUF150_C Gemin6
Other DBs
NCBI-GeneID: 3253296
NCBI-ProteinID: XP_566856
UniProt: Q5KNT2
LinkDB
Position
1:join(1446820..1446847,1446902..1446942,1446993..1447120,1447176..1447266)
AA seq 95 aa
MASIESYVDHTVQVILQDGRVIVGKLKGYDPRTNLILSDSVEREFSMDQGVEMIPLGLYV
IKGDNVAVVAELDEEKDSTINYNDIRAEPLAELRY
NT seq 288 nt   +upstreamnt  +downstreamnt
atggcctcaatcgaaagttatgttgaccacactgtccaagtcattttgcaggacggccgc
gttatcgttgggaagctaaaagggtatgatccgcgcacgaacctcatcctctccgactcg
gtggaacgtgaattttctatggaccaaggggttgagatgattccgttgggcctatacgtg
ataaaaggagacaatgttgcggtagtggcagagttggatgaggagaaagatagcaccatc
aactacaacgacatccgggcagaacctctagccgaattacggtattga

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