Cryptococcus neoformans var. neoformans JEC21: CNA05940
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Entry
CNA05940 CDS
T00243
Name
(RefSeq) general RNA polymerase II transcription factor, putative
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
cne
Cryptococcus neoformans var. neoformans JEC21
Pathway
cne03022
Basal transcription factors
cne03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CNA05940
09124 Replication and repair
03420 Nucleotide excision repair
CNA05940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cne03021
]
CNA05940
03400 DNA repair and recombination proteins [BR:
cne03400
]
CNA05940
Enzymes [BR:
cne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CNA05940
Transcription machinery [BR:
cne03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CNA05940
DNA repair and recombination proteins [BR:
cne03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CNA05940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
DEAD
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
3253925
NCBI-ProteinID:
XP_566947
UniProt:
Q5KNM9
LinkDB
All DBs
Position
1:join(1590329..1590699,1590759..1590833,1590890..1591669,1591723..1592024,1592083..1592198,1592262..1592450,1592504..1593135,1593232..1593367)
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AA seq
866 aa
AA seq
DB search
MSEPSSPASSLDFFESDASADSDYDEAPRRTRKQPSKKYGARHGTSTPTASGSGSGTKIK
INLSSLQRRAVEGNTAVEQEEEGDEDEEGYFDGLIGKRGVDLSGQTLKGDHSLRPLWVDD
RGNIIVEAFAPFAKQAQDFLVAISEPVSRPALIHEYRITKPSLHSAMSIGLETKVIIEVL
SRLSKTPLSPRLVARIEEWTASFGKVRLVLKDNRYFLETSVPEFLQKLMNDEVIKECMVH
REEETGPTVFGAEEGARPRRDFAIPGTEEARRRERGEDAEQTRENDAVLGAVIGISEADE
MDDEDDKVHSFEVSGERMEDVRRRCKDIDLPALEEYDFRNDTINPNLDIQLKPMTVIRPY
QEMSLAKMFGNGRARSGIIVLPCGAGKTLVGITAACTIKKSALVLCTSAVSVAQWKQQFL
HFSNISERQICAFTQGEKEMFSTSAGIVISTYSMIAKTGKRAHDAEKMMQFLRSREWGFL
LLDEVHVTPADMFRKCINNFKVHAKLGLTATLVREDDRIGDLGYLIGPKLYEANWMDLAK
NGHIATVQCAEVWCPMTPEFYREYLRNPSRKRILLHAMNPNKIQACQFLINYHESRGDKV
IVFSDNVFALEAYAKKLGKSFIHGGTPEGERLRILSRFQHDPQLNTIFLSKVGDTSIDLP
EATCLIQISSHFGSRRQEAQRLGRILRAKRRNDEGFNAFFYSLVSKDTQEMFYSSKRQGF
LIDQGYAFKVITELHGLHSMPNLVFASKDEQLSLLESVLNQGDAAAETADHYMRLNGGKH
LKRIAGAQPSTSGTTVQRFMAPLEHLSGGQNISYREQNKSVNKELSREVRQNKRAGGSSS
GKDSHSIFKKRKTELAAAKKQRETGF
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaccatcttctccagcttcatccctcgatttctttgagtcggacgcttcagca
gactccgactacgatgaagcaccacgccgcactcggaagcagccttccaagaaatatgga
gcccggcacggtacatccactcccacagcttcaggctcaggctctggtacaaaaattaag
ataaacttgtcctctctccaacgacgggcagtggagggcaataccgctgttgagcaggaa
gaagaaggagacgaggatgaagaagggtattttgatggtttaattggtaaacgaggagtg
gatctttcaggccaaacgctgaaaggtgatcattctttgagaccgctttgggtagatgac
cgcggtaatattattgttgaggcctttgctccctttgcaaagcaagcgcaagatttcctg
gttgccatttccgagccagtatctcggcccgcccttatacatgaataccgcataaccaag
ccttctttacattctgccatgtcaattggtcttgagaccaaggtcatcattgaggtcctc
tctcgtctgagcaagacacccctttcaccgcgacttgtcgcgcgaatagaagaatggacc
gcatcgtttggtaaagtccggcttgtattgaaggacaaccgatacttccttgaaacgagt
gtccccgaattcttgcaaaaactgatgaacgatgaagtcatcaaggaatgcatggtgcat
cgtgaagaggaaacaggtcctactgtatttggagcggaggaaggtgctcgtccacgacga
gactttgccattcctgggacagaagaagctcgaagacgagagaggggtgaagatgccgaa
cagactcgtgagaatgatgctgtcttgggtgcagtgattgggattagcgaggcggatgag
atggatgatgaagatgacaaagttcattcgtttgaggtgtctggcgagcggatggaggat
gttcgaagacggtgcaaggatatcgatcttcctgcattggaagagtacgatttcagaaat
gacacgatcaatcccaatctcgatatacagttgaagcccatgacagtcatcaggccgtat
caggagatgagtctagccaaaatgtttggtaacggtagagccaggtcaggtatcattgtc
ttaccttgtggagcgggaaaaacgctggtgggcataactgcggcatgtacgatcaagaag
agcgcgttggtgctctgtacttctgctgtatcggtagcccaatggaagcaacaattcctt
cacttctccaacatatcggaacgacagatctgtgccttcacccagggcgaaaaagaaatg
ttcagtacgtcggcgggcatcgtcatctcaacctactccatgattgccaaaactggcaag
cgagcgcatgatgcggaaaagatgatgcagttccttcggtccagggaatggggattttta
ctgttggatgaagtgcatgtgactccggcggatatgttcagaaaatgtatcaataatttc
aaagtgcatgccaagttgggtctcactgcaacgctggtaagggaggatgataggattggg
gatttgggatacttgattggtccaaagttgtacgaagccaattggatggatctcgctaaa
aatggccatattgccactgtccagtgtgccgaagtttggtgccccatgactccagaattt
tatcgcgaatatttacggaatccttctcgcaaacgcatccttttgcacgccatgaacccg
aacaagattcaagcatgtcagttcttgatcaactatcatgagagccgaggcgacaaggtg
atcgtattttccgacaatgtgtttgcactcgaggcgtacgccaaaaagttgggcaagtct
tttattcacggcgggacgcctgaaggcgaacggttgcggattctttcgcgattccaacac
gacccccagctgaacaccatcttcctctccaaggtcggtgatacttctatcgacttgcct
gaagctacttgcttgatccaaatatcttcccattttggttctcgacgacaagaagctcag
cgattgggtaggattctgagggcaaagcgaagaaatgacgagggtttcaacgcctttttt
tattcgcttgtttccaaagatactcaggagatgttctattcctcgaagcggcaaggattc
ttgattgaccaaggttacgcgttcaaagtgatcaccgaacttcacggtcttcatagcatg
cccaacctcgttttcgcttccaaggacgaacagctgtcattgctagagtcggtactgaac
cagggtgatgccgcggcagagacggcggaccattatatgaggttgaatgggggtaagcat
ctcaagaggattgcgggcgctcagccgagtacgagtgggacgacggtgcagaggttcatg
gcaccgttggagcatttgagtggagggcagaatatcagttatagagaacagaacaagagt
gtcaacaaggagttatcgagagaagtacggcagaataagagggctgggggatcgagtagt
gggaaagatagccattcgattttcaaaaagagaaaaacagaattggcagcggccaagaag
cagcgtgagacgggattctaa
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