Cryptococcus deneoformans JEC21: CNA07200
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Entry
CNA07200 CDS
T00243
Name
(RefSeq) ATP dependent RNA helicase, putative
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cne
Cryptococcus deneoformans JEC21
Pathway
cne03013
Nucleocytoplasmic transport
cne03015
mRNA surveillance pathway
cne03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CNA07200
09122 Translation
03013 Nucleocytoplasmic transport
CNA07200
03015 mRNA surveillance pathway
CNA07200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cne03019
]
CNA07200
03041 Spliceosome [BR:
cne03041
]
CNA07200
Enzymes [BR:
cne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CNA07200
Messenger RNA biogenesis [BR:
cne03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CNA07200
Spliceosome [BR:
cne03041
]
Complex C
Other components
EJC/TREX
CNA07200
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CNA07200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Ned1_M
AAA_19
CMS1
Motif
Other DBs
NCBI-GeneID:
3253478
NCBI-ProteinID:
XP_567037
UniProt:
P0CQ96
LinkDB
All DBs
Position
1:join(1965851..1966035,1966092..1966159,1966209..1966317,1966364..1966665,1967161..1967279,1967329..1967570,1967624..1967732,1967782..1967976)
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AA seq
442 aa
AA seq
DB search
MINSTNLNLTIKMSRPDEEELVDYDEAAEEILPPAPAAETNGDKADGDKKGSYVGIHSTG
FRDFLLKPELLRAISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQ
IEPVDGEVSIIILCHTRELAYQIKNEFTRFSKFMTNVRTGVFYGGTPISADQEILANKEK
CPHIVVGTPGRTMALVRDKKLNASKVKHFVLDECDKMLEQLDMRRDVQEIFRATPHHKQV
MMFSATLSKDIRATCKKFMQSPLEIYVDDETKLTLHGLQQFYLKLEEREKNRKLNDLLDN
LEFNQVCIFVKSVQRATQLDALLQECNFPSICIHSGLQQAERISRFQQFKAFEKRILVAT
DIFGRGIDVERVNVVINYDAPSDADSYLHRVGRAGRFGTKGLAISFVSSDADQEVLQRIQ
ERFTVAIPTLPETVDPATYMTS
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgataaacagcaccaacctcaacttgaccatcaaaatgtcccgacccgacgaagaagaa
cttgttgactacgatgaggccgctgaggagatcctgccccccgcccccgccgccgagacc
aacggcgataaggcggatggtgacaagaagggttcatatgtcggtatccactcgaccggt
ttcagggatttccttttgaagcccgagctcctccgagccatctctgatctcggtttcgag
cacccctctgaggttcaacaggaatgtattccccaggccatcctcggtacagatgttctg
tgtcaagccaagtctggtatgggtaagacggctgtgtttgtgcttgccgctttgcaacag
attgaacccgttgatggcgaggtttctatcatcattctctgtcacactcgagagcttgcc
tatcagatcaagaatgagtttactcgtttttccaaatttatgaccaatgtccgaactggt
gtcttctacggtggtactcccatctctgccgaccaggagatccttgccaacaaggaaaag
tgccctcacatcgttgttggtacccctggccgaaccatggccctcgtccgtgacaagaag
ctcaacgcaagcaaggtcaagcactttgttcttgacgagtgcgacaagatgctcgaacaa
cttgatatgcgacgagacgttcaggaaatcttccgagccacgcctcaccacaagcaggtt
atgatgttctccgccaccctttccaaggacatccgagctacttgcaaaaagtttatgcaa
agccctcttgagatttacgtcgatgatgagaccaagttgaccctccacggtcttcaacaa
ttctacctcaagctcgaggagagggagaagaacaggaagctcaacgacttgttggacaat
ctcgaattcaaccaggtctgcatctttgtcaagtctgttcaacgtgctactcagctcgac
gctctcttgcaagagtgcaacttcccctccatctgtatccactctggtcttcaacaagcc
gagcgaatctctcgattccagcagttcaaggcttttgagaagcgaatcctcgttgctacc
gacatctttggtcgaggtatcgatgttgagcgagtgaacgttgtcatcaactatgacgct
ccctcggatgccgactcttacctccaccgagtcggtcgtgctggtcgattcggcaccaag
ggtcttgccatctcctttgtctctagcgacgccgaccaagaggtccttcaaaggatccag
gagcggttcaccgttgccatccccactttgcccgagactgtcgaccccgccacttacatg
acttcgtaa
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