Cryptococcus deneoformans JEC21: CNB00490
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Entry
CNB00490 CDS
T00243
Name
(RefSeq) Pol II transcription elongation factor, putative
KO
K15176
RNA polymerase-associated protein CTR9
Organism
cne
Cryptococcus deneoformans JEC21
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cne03021
]
CNB00490
Transcription machinery [BR:
cne03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
CNB00490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_14
TPR_8
TPR_16
TPR_7
TPR_6
TPR_12
TPR_CcmH_CycH
ANAPC3
TPR_Slam
TPR_4
Motif
Other DBs
NCBI-GeneID:
3255621
NCBI-ProteinID:
XP_569058
UniProt:
Q5KMU2
LinkDB
All DBs
Position
2:join(139455..139495,139535..139713,139764..139886,139938..140081,140132..142017,142074..142208,142262..143106,143161..143368)
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AA seq
1186 aa
AA seq
DB search
MSNPARVILLVGKGGVQTDVDLDSLAQDEVADIIPVMLADYESECRDWTLIASEHWREGR
WNRVMDLLERAVSFFNGERGRRRDSASLINIHSMLAHLHLHLARSAPKVILQNAKYDKLD
PSIRTKDYHHREAAASLNAATEALRASGGSQEDEPVSLTMGKVIHYLATGQPGLAHPLVE
RLLQRQPNNLMALTAQARLQFARRSHLQALQTYQKLLTLAPEMSPDPRIGLGLCFWQLGD
RAKARTAWERALEREPGSWVCLLLLGLASLNDARQPSIPRTERLKLETEGVGFVQKAFKL
NNKSSASALALASVSGQGGQSQLPLASKLAERAVQYADNKRHAVLANSERGRLGFMAGDL
ADAGTYIAAVKKEDPNAVNIIAELTLGQMAIKSGNLREALNYIEQTAKRLNGQGPLEYTV
LHACLLAYPHPGMSHDEVVRNRTLARNMLTEVHNLVASAETEADWAKLRGVGSDADVFVD
LAKLWQGENVEKAIGAYQTALSIITDNDLDSAQEPGLDPPSFTALRLSDNLGALYHLEGN
VETAERMYQEALQKIATQEGKEAETLKTVLAYNLGRAYEEGGDHAKAAQWYRDVLRQHPE
HVESKVRLALIATSAGRHFDAHTLLKECLQSDENNLILRSVYTNFLITIGSYREAFAFTT
QTLKVDKSDAWTFCALGWLHFTLGREAKSPQELAERPKQYLRSAEAYERALIIDPKCAMA
AQGLAIALVEDSLALRGTNYGAEEGKVRARLAGQTLGIFGRIKDSLAEGAVNVNLGHCYF
IRGEEEKAIESYMTASNAFDEKDVNVLLYLARAWYALANRESNFSAMNKALDYCQKAMHI
HPADRAILYNIAMIQQKAAEMLFSLDCSKRTLEELTIALKQAQQAVDTFRSLADDRSGSL
PYDAELADQRARYGEGLLRRAAGEMTKQEAYQGEALARVEEARRLRAEEQARIQAAEEAR
QAELRIKAEEIAEQRRKAREEAQAWQEELAARQAEEEARRAAIVEKRKRRKEGIADSGED
GEGEGRKREKKPRKKKTKEGKKGRKVRSKSEVGTTDEEEEARETGDDEDEETSRARKAKS
TLAMLKAKRKARRADPDDDEEEDEDEVNQGQAKRGKQFKSKAYISDSDDENDEAPVSASR
PGSEEPLHQKDDEREQSEAHTPAKSQNDEDSGMDVDQNGNDEDEDE
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgtccaatccggcaagagttatcctgctcgttggtaaaggcggtgtgcaaacggatgtc
gatctcgactctctcgcgcaagatgaagtggccgatatcatcccagtcatgcttgctgac
tatgagtcagaatgccgagattggacattgattgcgagcgagcattggagagaagggcgc
tggaacagggttatggatctgctggaaagagccgtttcattcttcaatggagaacgggga
aggcgaagggattctgcttctctcatcaacattcactcaatgctcgctcaccttcacctc
catcttgcccgtagtgcgccaaaggtcatccttcaaaacgcaaaatatgacaaattggat
ccctcaataagaacaaaagattaccaccatcgtgaagctgctgctagcctgaatgccgct
actgaagctttgagagcctctggaggtagtcaagaagatgaacctgtcagcttgactatg
gggaaagtcatccattaccttgcaactgggcaaccagggcttgcacacccacttgtcgaa
agacttcttcagcgtcaacccaacaacctcatggccctcaccgctcaagcccgtcttcaa
tttgcccgacgatcacatcttcaagcactccagacataccaaaaactccttactctcgct
cccgaaatgtctcctgatcccagaatcggtctcggcttgtgtttctggcaacttggggat
cgcgccaaggcaaggacggcgtgggaacgtgctctcgagcgtgagcctggatcttgggtg
tgtttgttgctcctcggtttggcgtctctcaacgatgctcgccaaccttctatccctcgc
acggaacgactcaaacttgaaactgaaggtgtaggctttgtccagaaagcattcaaactc
aataacaagtcgtctgcatctgcacttgcgctcgcgagtgtatctggtcagggtggacaa
agccagcttcctcttgcgagcaagcttgccgaacgtgcggtccagtatgcggataataag
cgtcatgctgttcttgccaattctgagagagggagattaggtttcatggctggagatctc
gccgatgctggaacatatattgccgccgtgaagaaggaagaccccaacgctgtcaacatt
attgccgagttgacacttggccagatggctatcaaaagtggcaatttgcgagaagctctt
aattacattgagcaaacagccaagaggttgaacggccaaggtccccttgagtataccgtg
ctgcatgcttgtctgcttgcttatcctcacccgggtatgtcacacgatgaagtcgtccgc
aataggactctagcccgaaacatgttaaccgaggtacacaacttggtggcctctgccgag
acggaagcagactgggcaaagttgagaggtgtcggttccgatgccgatgtttttgtggat
ctcgcaaagttgtggcagggagagaatgtggaaaaggctatcggagcctaccaaactgca
ttgtccattatcaccgacaacgatctcgattctgctcaggagcccggtcttgatcctccc
agtttcactgcactccgattatccgataatctaggcgcactttaccaccttgaaggcaac
gtcgaaactgctgagaggatgtatcaagaagctctacagaaaattgccactcaagaaggc
aaggaagcagagaccctcaagactgtgttggcgtacaacctcggtagggcgtacgaggaa
ggaggcgaccacgctaaagctgctcaatggtaccgtgacgtgttacgtcaacatcccgaa
cacgtcgagtccaaggtgcgcttagcccttatcgccacttctgccggtcgacactttgac
gctcacactctactaaaagagtgcctccaatctgacgagaacaatctcatcctccgttca
gtctacaccaacttcctcattactattggttcttaccgagaagcttttgcgttcactaca
caaacccttaaggtcgataagtccgatgcatggacgttttgtgcgctcggctggctgcat
ttcacccttggtcgagaagccaaaagcccacaggagctcgcggagcgtccaaagcagtat
ctccgttctgccgaagcttatgagcgagcactcatcatcgatcccaaatgtgccatggcc
gcgcaaggtttggctatcgcgttggtagaggatagtcttgcgttacggggtacgaactat
ggtgcggaggagggtaaagttcgagcgagattggcgggtcagacgttgggtatctttgga
aggatcaaggattccttggcggaaggtgcggttaacgttaaccttggtcattgttatttt
atacgaggtgaagaagaaaaagctattgaatcgtatatgaccgcttccaacgcctttgat
gagaaagatgtcaatgttttgttatatctcgctagggcttggtacgcgcttgccaaccga
gaaagtaatttctcagctatgaacaaggctttggactactgtcaaaaggccatgcatatc
caccccgccgatcgcgccattctttacaacattgccatgatccagcaaaaagccgctgaa
atgctcttctccctcgattgttccaagcgtaccctcgaggaacttaccatcgccctcaaa
caagctcagcaagccgtggacactttccgctcccttgcggacgacaggtccgggtcttta
ccatacgacgccgagctcgcagaccagcgagcgagatatggtgaaggtctgcttagaagg
gcggcgggtgaaatgactaagcaggaggcttaccaaggcgaggcacttgcacgtgtggaa
gaggcgagaaggttacgtgccgaggagcaagcgaggatccaggcggcggaggaggctcgt
caagccgaattaagaatcaaagccgaggaaattgctgagcaacgacgtaaagcccgagaa
gaagcgcaggcgtggcaggaagagttggcagccaggcaggcagaggaggaagccaggcga
gcggctatcgtggagaaaaggaaaaggaggaaggaaggtattgccgatagtggtgaggat
ggtgaaggcgaaggtcgaaagagggagaagaaaccgaggaagaagaagacaaaggaaggg
aagaagggtaggaaggtaaggagcaagagtgaagttggcacgaccgatgaagaagaggaa
gcgagagagacgggcgacgatgaggatgaggagactagtcgggcaaggaaggccaagtct
acactggctatgctcaaggcaaagagaaaggccaggagggcggaccctgatgatgatgag
gaagaggatgaagatgaagttaaccaaggacaagcaaagaggggaaaacaatttaaatcc
aaagcatacatctctgactctgacgacgagaatgacgaagcacccgtttcagcctcgagg
ccgggaagtgaggaacctcttcatcaaaaggatgatgagagagaacagtcagaagcccac
actcctgcaaagagccaaaatgatgaggactctgggatggatgtggatcagaatgggaat
gatgaggatgaggacgaatag
DBGET
integrated database retrieval system
