KEGG   Cryptococcus deneoformans JEC21: CNB02280
Entry
CNB02280          CDS       T00243                                 
Name
(RefSeq) DNA-directed RNA polymerase II 13.3 kda polypeptide, putative
  KO
K03008  DNA-directed RNA polymerase II subunit RPB11
Organism
cne  Cryptococcus deneoformans JEC21
Pathway
cne03020  RNA polymerase
cne03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cne00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CNB02280
  09124 Replication and repair
   03420 Nucleotide excision repair
    CNB02280
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cne03021]
    CNB02280
   03400 DNA repair and recombination proteins [BR:cne03400]
    CNB02280
Transcription machinery [BR:cne03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     CNB02280
DNA repair and recombination proteins [BR:cne03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CNB02280
SSDB
Motif
Pfam: RNA_pol_L_2 RNA_pol_L BBS7_hp
Other DBs
NCBI-GeneID: 3255984
NCBI-ProteinID: XP_569157
UniProt: Q5KMB4
LinkDB
Position
2:complement(join(660650..660995,661052..661141,661217..661269))
AA seq 162 aa
MNQPNRIDSWLLQDDEKPLTITEDPKLPNASTIVIRRQDHTLGNMLRAQLMLDPTVLFAG
YKVPHPLENDILLKIQTDERSNPAEALKRACHELIRQTVHIKAQFQQQAKNIEMGMGPEQ
GVAPDAAGANGAYDPYGDGFGREGNVVVGGAVRDQGQDVYDF
NT seq 489 nt   +upstreamnt  +downstreamnt
atgaatcagcctaataggattgactcatggttgttacaagatgatgagaaaccattaacg
atcacggaggaccccaaactgcccaacgcctccactatagtcatacgacgacaggatcat
acattgggaaacatgctcagagcacaattaatgctcgaccctactgttctcttcgcgggc
tacaaagttcctcaccctcttgaaaacgacattcttctcaaaatccagaccgacgagcgg
tcaaatcctgcagaggctctcaaacgtgcttgtcatgaactgatccggcaaaccgtacac
atcaaagctcaattccaacagcaagcaaagaacatcgagatgggtatgggtcccgaacaa
ggagtcgctccagatgcagcaggtgcgaatggggcgtacgatccgtatggggatgggttc
gggagggagggcaatgtggtcgtcggcggtgcagtgagggaccaggggcaggatgtatac
gacttttag

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