| Entry |
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| Name |
(RefSeq) nucleic acid binding protein, putative
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| KO |
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| Organism |
cne Cryptococcus deneoformans JEC21
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:cne00001]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CNB04290
09122 Translation
03013 Nucleocytoplasmic transport
CNB04290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:cne03019]
CNB04290
03041 Spliceosome [BR:cne03041]
CNB04290
Messenger RNA biogenesis [BR:cne03019]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
CNB04290
Spliceosome [BR:cne03041]
Complex C
Other components
EJC/TREX
CNB04290
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CNB04290
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
2:join(1249676..1250140,1250189..1250761,1250816..1250911,1250956..1252195,1252243..1252709,1252766..1253555,1253606..1254063,1254118..1254305,1254356..1254419,1254473..1256189,1256246..1256391)
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| AA seq |
2067 aa
MPPRRSTAKSKVQSATASSFSPAELITPSLNEQLLEYISQWETTGTESLHKLIISLLNTI
NSAPTTLGVVPLLHVLVTLLKSNVDERELTGVFEGVLDELEDDRRDIFGEALVDAVEVLE
EEQEDVGGNKNKGEKETEEAEDKSPKGLSILKLLLESNTLPSYIPNLLLNPERLIPLNLH
PMPRNPRAFQSALVKKNTTLFFKQRKFNLLRECSEGFSGLIVLLTSEDTLPSHPEEEDDE
ERRNRADRVWGKIMRLIGYFNLSPPRVLDIILEVFSCHIIHHWPFFLELLRCSPWGPSSN
QEDDDGGISTKKGWKEEEVEGIENALKRDGDRVLSQVLGFKFGFFRKPEAGDTPIGLIYT
AALLIKHGFVGLTDLLPCLSPDDNEMETIRKKWASSLSSRSGPANALTDTILDDDEPPSG
TIGSISEQAQNIPTKPPPEQRIQLTQALLALGDKAASEYMLARWPWIAQKSTGVADLILD
IVEDALKPVYEEVVAKREEKEEFDLQAVAPIVQDSESIGKQTVLTLFAPAPPETTTKKFK
FFYPHREGVSESWSTVDEIHEKGLRWLGLIGGLGGRRARLMVMLSRIGAAQFERLRENKL
EQGLTAEHSQPTVEELKPWLDIIRVSLLPSLSCSMASGTFDVELWSLLKLFPYTSRYSLY
GEWRDSTCSANGRKPCLIAAHAAAMTTKEVQKALRRVTSTNTSATSGATPTERHSARALA
KQSHHNPVFVWTTAVTQVKAYPNIGEAIVDAGRYMAQLSFDVATFVMLDTLSDDRALRLN
EMGTGVALWLERLSKFVGDFNRRYSNMDLYPVLQYIINRLMRGHSGDLIILEKLMSSMSG
IEPVPNDGVSEAQLQAYAGGREMIREAFSATRISVTAPPEPGASEQPTRAPVEKVKNVKK
SLPRLVNALREKGLAMPIWIALAQTRQAVVDKMVNAPIKAMNLVQDTCHNAFVQFGDFLV
EYLTSDEHIALIPDLQQLIVDFGLEYGMAFQILRPRLNAEIERARVEEKAAVQARLEAAK
KAMSEKERNGSPQKVESPALPGSPTTPSLQFTPGATPGPGEIEDVVMEESEKGALSIPAP
KTPSSKSKMWWPSALTPTMQQTRKLLPREANEVMSAPFFVIFWHLTTPDIAFSPQSYDNA
IKSINRHISTISSWWVNPRDKSKMAEQRDELARLKARVKVLQEEKEAHGSLVNGPMKRRM
RLESGKWFGKAIVEKNLQRPLAIQLHQYCFYPRAILSPCDAVFVAKFIRMAHNLGTVGFS
TLFVYNNFFNDNLAACIFSCTDSEARNLGRCLALILADLDKWHQSENVYLKEALGISPNP
IEGGEQKRLPGMLFRSKAGDDMREMSWQEFRNFYAKCHNVLTRALISCWSEAEFMHNKNA
IIVALQVIKYFPLMETNGKAIEAAVKKLQAGEVGEIPNDLKMMCTSFLSGLKKRQDARPF
VAPATFHGAAARAAIARAPSAPKVESPAPSGSISTPSRSQPANGTNGTASPSPAGTPGPM
TTDPRTLRQKVEESRARAAASAAAKEQEAGTAPQSPLVHPIPTRPGLPSRLASSANSVPV
TPTGPSAITRTSTPNATSVNSRAHTPVSSMGPPPDMSVDEARAAARARRLGGIHRPPPPP
PSAAGQTTESAVSTAFTNLDAERQEEKAEEKEKEPGTPPTPLVESTRGRSPPASVKTSPT
TTVRTHRDGSVESRASERSKRREQGRDKYRRDKDHRDRDKEREREKEKDRMDRSAAEDDK
RRQEDNVPASTQSDSGRESRRSRRDGERERDREEKKNREREREDRKERDRERSYRGEDSD
RKRKRDEESSSRKLEPDASSGSRKERERERRRYDERDRERERDFRDRERDRERDRNERDR
DGHRDRRERERDGRRRDRDSRDVRENRERRRTPLAEDGPELASAASKDNTDTASNVSGPG
AARTPHALPARPGNSEQVPRLPPNAAPVSQNPQEPLSLAARLGGMARPASPHVRANEPIH
RSTRDDLGRDNDWNNAPRRDEATEEESRKEPADRKRALEAEAGPEAREESPGASKRVKID
RNKARGRRQEGGGAKMFQQAMGSTKDK |
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| NT seq |
6204 nt +upstreamnt +downstreamnt
atgccgccccgtcgaagtacggccaagtcgaaagttcaatctgcgacagcttcctctttc
tctcctgccgaactcatcacaccctctctcaatgagcaactgttggaatacatttcacaa
tgggaaacaacgggtaccgagtctcttcacaagcttataatatcactcctcaatactatt
aattcggcgcctacaacacttggcgttgtgcctttactacacgtgcttgtgacgcttctc
aaatccaacgtggatgaaagagagctcacaggtgtgttcgaaggtgttttggatgagctt
gaagacgacagaagggatatcttcggtgaagcactcgtggatgctgtagaagtgttggaa
gaggagcaagaggacgtgggcggaaacaaaaataaaggagagaaggagactgaagaagca
gaagacaagtctcccaaaggactttcaatcctcaagcttcttcttgagtcaaatactctt
ccttcatatatccccaatctcctcctgaacccagaacgtctcatccctctcaatcttcac
cctatgccccgaaaccctcgagctttccaaagtgctttggtcaagaaaaataccactctt
tttttcaagcaacggaaattcaatctcttgcgtgaatgttcggaaggtttctctggactg
atcgtgctcctaacttcagaagacactcttccctctcatccagaggaagaggacgatgaa
gaaaggcgaaatagggcagatagggtctggggaaagatcatgcggctgataggatacttc
aatctctcaccgccaagagtactggatatcatcctcgaagtgttcagctgccacatcata
catcattggccattcttccttgagctcttgagatgctcaccatggggaccaagttctaat
caggaagatgatgatggtggaatctcaacaaaaaagggctggaaggaggaagaggtcgaa
ggaatcgagaatgctttgaagcgggacggcgacagggttctgagtcaagttttggggttc
aagtttgggttcttccgtaaacccgaggctggtgacacacctatcggtctcatttacact
gctgctctccttatcaagcacggttttgtcggcttaacggatcttttgccatgtctttcc
cccgatgacaatgagatggaaacaatacgcaagaaatgggcgtcgtctctttcatcacgg
tctggccccgctaatgctctgaccgataccattcttgatgacgatgaaccgccctctggc
accattgggtctatctccgaacaagctcaaaacatcccgacaaagcctcctcccgagcag
aggatacagcttactcaagcacttctcgcattgggcgacaaggctgcgtcggagtacatg
ttggcaaggtggccatggattgcgcagaagagtaccggagtggctgatttgatcttggac
atcgtggaagatgcactaaaaccggtttacgaagaagttgtggccaagcgagaagagaaa
gaagagtttgacctgcaggctgtcgctcccatcgtacaagactcagaatcaatcgggaaa
cagaccgtcttgactctttttgcccccgcaccccctgaaacgacgaccaagaagttcaag
ttcttctatcctcatcgtgagggcgtatccgaaagctggtcaactgtggacgagatccac
gagaagggcttgaggtggctgggtttgattgggggacttggaggaagaagagcgaggctt
atggtcatgcttagcagaattggagctgcgcagtttgaacggctccgagagaacaagctg
gagcaagggttaacagcagagcattcgcagccgacggtggaggagctcaagccctggctt
gacatcattcgtgtctcccttcttccttctctgtcttgttctatggcttcaggaacgttc
gatgttgaactctggtcccttctcaaactcttcccctatacttcacgatattctctctat
ggcgaatggcgagatagcacttgcagtgcaaatggcaggaaaccttgtctaatagcagct
cacgccgcagcgatgactaccaaagaggttcaaaaggcccttcgacgagttacgtcaacc
aacacctctgctacatccggtgccactcctaccgaacggcatagtgcccgagcacttgcc
aaacagagtcaccataaccctgtgtttgtctggacaactgcagtgacgcaagtgaaagcg
tacccaaacatcggagaggccatcgtagatgcaggaaggtatatggctcaattgtcattc
gacgtggccacgtttgtcatgttagatactttgtcggacgacagggctttaaggctgaat
gagatgggtaccggtgtggcgctctggttggaacgattatccaaatttgttggagatttc
aacagacgatacagcaacatggatctttaccctgttttgcaatacatcatcaatcgactc
atgcgcggccactctggtgacctcatcatccttgaaaaactgatgtcttccatgtcaggc
attgagcccgtccctaatgatggtgtttctgaggcccagcttcaagcgtacgctggtggc
cgggaaatgatacgggaggccttctccgccactcgaatcagcgtgactgcccctccagag
cctggcgcttcggagcaacccacgcgagcgcctgtagagaaggtgaaaaatgtgaagaag
agtttgccgagactggtcaatgcattgagggaaaaggggttggcaatgcccatctggata
gctttggcgcagacgaggcaggctgtagtggacaagatggtaaatgctcccatcaaggcc
atgaatcttgtccaagacacttgtcacaacgcattcgttcaattcggcgatttccttgtt
gaataccttacttctgacgagcatatcgctcttattcccgatcttcagcaacttatagtt
gattttggcctcgagtatggtatggccttccagatcttgcgaccacgtttaaacgcggag
attgaacgtgctcgtgttgaggagaaagccgccgtccaagcgcggcttgaagccgcgaag
aaggcaatgtctgagaaggagaggaacggatcacctcagaaagtcgagagcccggcgctt
cccggatcacccacgaccccgtctttgcagttcactccaggtgcgactccgggaccaggc
gaaattgaggatgtcgtaatggaagagagtgaaaagggcgcactcagtatacctgcacca
aagacgccgagcagtaaaagcaagatgtggtggccctctgctttgacgcctaccatgcaa
caaacgcgaaaacttttgccacgtgaggctaatgaggtcatgagtgcgcctttctttgtc
attttctggcaccttacgacccccgacatcgctttctcccctcaatcatatgataacgcc
ataaaatctatcaatcgacatatctccaccatctcctcttggtgggttaacccaagagat
aaatcaaagatggccgagcagcgggatgagttagctagactgaaagcgagagtgaaggtt
ctgcaagaggagaaggaagcacacgggtcgctggtcaatggaccgatgaagaggaggatg
aggctggagagtggcaagtggtttggcaaggcaattgtggagaagaatcttcaaaggccg
ttagccattcagctccatcaatattgtttctaccctcgagctattctttcgccctgcgac
gctgtcttcgtcgccaagttcattcgtatggctcataacttaggtactgttggcttctcg
acattgttcgtttacaacaacttcttcaatgataacctcgccgcctgtatcttttcctgt
acggatagtgaagctcgtaatcttggtcgatgcttggctctgattcttgccgatttggac
aagtggcatcagagcgaaaacgtgtatctcaaagaggcgctcggtatctcacctaacccc
attgagggcggagaacaaaagaggctacctggtatgctatttaggtcaaaggccggtgat
gacatgcgtgaaatgtcatggcaagaattcagaaacttttacgccaagtgtcataacgtc
ctcactagggccctcatttcatgttggagtgaagcggaatttatgcataacaagaatgct
atcatcgtcgccttgcaagtaatcaagtacttccctctcatggagacaaatggcaaagca
atcgaagccgcggtaaagaaattgcaggccggtgaggttggagagatccctaatgactta
aagatgatgtgcacttcattcttatcgggtcttaagaaacgtcaagatgccagaccattc
gtcgcccctgcaacattccacggcgccgcagctcgagccgctatcgcaagggcaccaagt
gcccccaaggttgaatctccagctcccagcggcagcatatcaactccctctcgctcccaa
ccagctaacggcacaaatggtacagcctcgccttctccagccggtactcccggacctatg
accacggatcccagaactttgcgtcaaaaggttgaagaaagtcgagccagagcggcggct
tcggcggccgccaaggaacaggaagctggtactgctccgcaatcccctcttgtacacccc
atacccactcgacccggtctcccctctcgtcttgctagctccgctaactcggtccctgtg
actccaaccggcccctcggctattacccgaacttcgacgcctaatgcaacctctgtgaac
tcccgtgctcacacacctgtgtcttccatgggtccacctcccgatatgtctgtggatgaa
gcccgtgctgctgctcgtgctcgcagactcggaggtattcaccgtccccctccacctccg
ccatctgctgccgggcaaactacagagagtgcagtatctactgccttcacgaacttggat
gcggaaagacaggaagaaaaagcggaagagaaagagaaagagcccggtactccacctact
ccccttgtggagtctactcgtggcaggtctccaccagcctctgttaaaacatcgcctaca
actactgtgaggactcacagagacggcagcgtcgaaagccgagcgagtgagagatcgaag
aggcgcgagcaaggcagagataaataccgtcgtgacaaagatcacagggatagggacaag
gagagagaacgggagaaagagaaggatagaatggatcgatctgctgcagaagatgacaag
aggcgtcaggaagataacgttccagcgtccactcaaagcgattcagggcgcgaatcgagg
aggtccaggcgtgatggagagcgagagcgagacagggaggagaagaagaatcgagagcgt
gagagggaggatagaaaggaaagggacagggaaaggtcttacagaggtgaagacagtgat
cgcaagcgtaagagagatgaggagtcttcttcgaggaaactcgagccagacgcgtcaagt
ggcagtaggaaggagcgcgagcgagagcgaaggaggtatgacgaaagggacagagaaagg
gagcgcgatttcagggaccgggagagggaccgagaaagggatagaaacgagcgagacagg
gatggtcatcgtgacagacgcgaacgtgagcgagatggtcgacgacgagaccgagacagc
cgcgacgtccgagagaaccgtgaacgacgtcgcacacctcttgctgaagacggtcccgag
cttgcatccgccgcctctaaagacaataccgatactgcatctaacgtttccggccctgga
gctgccagaacaccgcatgccctcccggcaaggcctggcaactctgagcaggttcccaga
ctacctccgaatgctgctccagtatcccagaacccccaagaacctctcagtttggctgcc
agattgggcggcatggcacgaccggcttctcctcatgtaagggccaatgagcctattcat
agatctacaagagacgacctcgggagggataatgactggaataatgcgccgaggagagat
gaagctacagaggaggaatcgaggaaagagcctgctgatcgaaaaagagctttggaagcc
gaggctggccccgaggctcgagaggagtcacctggagcgtccaaacgtgttaagatcgat
cgtaacaaggcccgtggacgaaggcaagagggcggtggtgcgaaaatgttccagcaagcc
atggggagtacaaaggacaaatag |
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