Cryptococcus deneoformans JEC21: CNC02010
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Entry
CNC02010 CDS
T00243
Name
(RefSeq) exosome complex exonuclease rrp45, putative
KO
K03678
exosome complex component RRP45
Organism
cne
Cryptococcus deneoformans JEC21
Pathway
cne03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNC02010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cne03019
]
CNC02010
Messenger RNA biogenesis [BR:
cne03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CNC02010
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
3256461
NCBI-ProteinID:
XP_569460
UniProt:
Q5KKS4
LinkDB
All DBs
Position
3:join(559349..559512,559573..559692,559745..559847,559897..560034,560087..560166,560215..560455)
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AA seq
281 aa
AA seq
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MVREIDPPSVQNEFLLAALAEGKRLDGRLPLQMRDVHYIFGDELGCVECRLGKTAILAQV
SATIVKPRDDRPYEGFLLINSEIGPMASSVYENGRPGDDEVMIGRLLEKSIRRTEAIDRE
ALCILAGEKVWQLRLTLHFLSDSGNLLDCAALAGMAALKHFRKPDVEVIGDEVIIHSPEE
RAPVPLAIHHTPLCLTFAYFENLPPILDPSHVEMMLCSGTLTLTLNAQREICVLSKAGGA
PLGAEEIMGVVKVGVDKVRELVRHLEEELEKDRTSRVVEVR
NT seq
846 nt
NT seq
+upstream
nt +downstream
nt
atggttagagagatagacccaccatcagtccagaacgagtttctcctcgccgccttggcc
gaggggaaaaggcttgacggcaggctaccccttcagatgcgggacgtccattacattttt
ggagatgagcttggctgtgtggagtgtcgcttggggaagacagctatacttgctcaagtg
tcggcgacaattgtcaaaccgcgagatgacagaccctatgaaggatttctattgatcaac
tctgaaatcggacctatggctagcagtgtttatgaaaacggaagacccggtgacgatgaa
gtcatgattgggagacttctagagaagagtatccgacgtactgaagccattgacagagaa
gccttgtgcattcttgcaggcgaaaaggtttggcaactgcgcctcactttgcactttctc
tcggattcaggcaatctccttgactgtgccgctcttgcaggcatggcagcgttgaaacat
ttcagaaaaccggatgtagaagttattggcgacgaggtcatcatacactcaccagaggag
cgagctcctgtgccattggccatccaccatacacccctatgtctcacgtttgcctacttt
gaaaatctccctccaatccttgacccctcccacgtcgaaatgatgctttgctcgggcaca
ttaacccttacgcttaacgcacagcgagagatctgcgtcctttcaaaagctggcggggcc
cctctcggcgccgaagaaattatgggcgtcgtcaaagtcggtgttgataaggtcagagaa
ttagtgaggcatttggaggaagagctagaaaaggaccgtacgagcagagttgttgaagta
cgttag
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