Cryptococcus deneoformans JEC21: CNC04330
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Entry
CNC04330 CDS
T00243
Name
(RefSeq) nucleoporin-interacting protein NIC96, putative
KO
K14309
nuclear pore complex protein Nup93
Organism
cne
Cryptococcus deneoformans JEC21
Pathway
cne03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CNC04330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cne03019
]
CNC04330
Messenger RNA biogenesis [BR:
cne03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
CNC04330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nic96
Motif
Other DBs
NCBI-GeneID:
3256375
NCBI-ProteinID:
XP_024512446
UniProt:
Q5KK42
LinkDB
All DBs
Position
3:complement(join(1313008..1313322,1313372..1314063,1314114..1314231,1314281..1314929,1314992..1315224,1315276..1315656,1315712..1315958,1316011..1316231))
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AA seq
951 aa
AA seq
DB search
MSTNSPYRPHNHGPAARPPAASALSSLLAQANSLNEVDYDSELPQIRFGIDDIERMSEAV
AGRGKRAKSEKGEAFNLLSNLGVNTSQLTHSISQLPSEPAAPRPRRRRAAQIQAQTADQV
PELGRGFVAAEGDIGTWGRNWHEMVILSGIEMQRQRTVNSFQKQFQQRILQNWQLEKARV
LQDELGVTDDELAGIVDAARLAASTSGNSTLGRSALGASTRRFPMGQSTLGKSTTAESRE
GGLVMHTKMVRYERVIGELNQKRLRKEPYEFCQALSESTKNDSKNPLLWQSFNLLAHLVY
EPSLRDSEYRGSSHSEAVPPVAEPVNERQYSAAYLGDQKAHQAALLRGRLVTGGLKYLER
DFERHVDETIARNPKEAALGGVPGIRNKVRAFVDVTLRTKEAREAYKPESVNGTLLWAQT
YYLVRCGYIDDALNLVAENQQHISRDDWSFPGCFKSAMQSPERRLSKTQRDQLYNDFNAH
IRNNPLIDQFKAALYKLVGRFELNRKTAKVATTTEDWMWLQLNLVRENRDGDAPQEQYDL
ADLGRLLEKYGSDKFDAGGTKPLAWFNLLLFTAQFEKAVAYLYSKPQMKTDAVHFAIALS
YYGLLRVPTKGDEAELLAVTDSGDVSFLNFARIIKQYIAPFFKLEPQTALQYAYLVMLNS
DAPAPSGPKQRQLCLELVRDIVLSSRSWSRLLGSVRSDGSKETGVIERDLKLLKLEDEQD
YLRQVVLAAADQSSLDSSLTDSIELYHLAGSYDKVVETVNRALGHSLSQTAGTAPLPSDA
AQVGLTGAFGGAPDLYSLAQKVHAVYERDFGKRTRVSSLHWETLETLLQLKLALAQFAAD
RPDLALETFKATNLLPLDNDPSSITRYAQKFRDMLDQPVVSNLDDVIVTTMKCLHLLSQQ
LKQSPYGDQGRAAQLSVYKHQAQCLIQFASTLRLRLGPDVYRQLSSMSAFF
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atgagcacaaatagcccatataggcctcataaccatgggccagcagcaaggcctccagcg
gcatccgctctttcctcccttctcgcccaggcaaactcccttaatgaagtcgactatgac
tcggagcttccgcagatcaggttcggcatcgatgatatcgagagaatgagcgaggccgtc
gcaggaaggggaaagagggcaaagagcgaaaagggagaggcattcaacctcctttcaaat
ctcggcgtcaacacttcccaactcacccattctatatctcaactcccatccgagcctgca
gctcctcgtcctcgtcgccgtcgtgcggcccaaattcaagcacaaacggccgatcaagtg
ccagagctcggacgcgggtttgttgcggctgaaggtgatatcgggacatgggggaggaac
tggcatgaaatggttatcctgagtggtattgagatgcagaggcaaagaactgtcaattct
ttccaaaaacaattccaacaacgaatcctccaaaattggcagcttgagaaagctcgagtc
ctccaagacgaattgggcgtgaccgatgacgagcttgcaggtatcgtcgatgccgcccga
ttggctgcaagcacctcgggtaactcgaccttgggcaggagcgcccttggagctagtaca
agacggttccccatggggcaatccaccttgggcaaatctacaaccgcagagtcaagggaa
ggtggtttggtcatgcacaccaagatggtgaggtacgagagagtcattggggagctcaat
cagaagcgtttgcgaaaggagccatacgagttttgtcaggcattgtcagagagtaccaag
aatgactctaaaaatcctctactctggcagtcattcaaccttttagcccatcttgtttac
gaaccttcccttcgcgattcagagtatcgcgggtcatcacattctgaagccgtacctcct
gtcgccgagccggtcaatgaaagacaatactctgcggcgtatctcggtgaccaaaaggcc
caccaggcggcgttattgaggggaagattagtgacgggtggtctcaaatacctcgaaagg
gactttgagaggcatgtcgacgaaaccattgctaggaaccccaaagaggctgctcttggc
ggtgtgcccgggatccgcaataaggtccgtgcctttgtagacgttactttgcgaacgaaa
gaagctcgagaggcatacaaacctgagagtgtcaacggtactcttctctgggcccagacc
tactatcttgtccgatgtggctatattgacgatgctctcaatcttgtggcggagaatcag
caacacatcagccgtgatgattggtctttccccggttgtttcaagtcagccatgcaatct
ccggaacgccgactgtccaagactcagcgagatcagctttacaatgatttcaatgctcat
atccgtaacaatccccttatcgatcagttcaaggccgccttgtataagcttgttggcaga
ttcgaattgaaccggaaaactgccaaggtcgcgaccaccactgaagactggatgtggttg
caattgaatctggtgagagagaatagagatggggacgcacctcaagagcagtacgacctg
gcggatctggggagactgctcgaaaagtatggaagtgacaaatttgacgcaggtggtaca
aaaccattggcttggttcaacttgctgttgttcactgcacaattcgaaaaagctgtggcg
tacttgtactcaaaacctcaaatgaagaccgatgctgtgcattttgccattgccttgtca
tactacggtcttttgcgagtgcccaccaaaggtgatgaggccgagctattggctgtgact
gactctggtgacgtctcgttcctcaatttcgcccgtatcatcaaacagtacatcgctccc
ttcttcaagcttgaaccacaaactgcccttcaatacgcctatctcgtcatgctcaacagc
gatgcacccgctccttcgggccccaaacaacgacagctgtgtctcgagctggtccgagat
atcgtgctttcttcccgaagctggtctcgtctgctgggcagtgttcgttcggatggcagc
aaggaaactggcgtgattgagcgtgacctcaagttgctcaagcttgaagacgaacaagac
tacttgcgccaagttgtactcgctgctgccgatcagtcatctcttgattcttccctcacg
gactccatcgagctgtaccaccttgctggctcatacgacaaggttgtagaaacagtgaac
cgagcccttggtcactcacttagtcaaacggctggcacagctcctctccctagtgacgcg
gcgcaagttggactcaccggtgctttcggtggagctcctgacctctacagcttggcacaa
aaagttcatgctgtctatgaaagggactttggcaagagaacgcgagtgtcgagtttgcat
tgggagacattggagacgctcttgcagctcaaattggcgttggcgcagtttgctgcagac
agacctgatctggctttggagacattcaaggccactaacctcctcccgcttgacaacgac
ccttcatccatcacacgctacgctcaaaagttccgagacatgctggaccaacctgtcgtc
tccaaccttgacgacgtgatcgtcacaactatgaagtgtctccacctgctttctcaacaa
ctcaagcaatcgccctacggcgatcaaggccgcgcggcgcagttgagcgtttataaacat
caggcacagtgcttgattcagtttgcgagcacgttgaggctgagattaggaccggatgtg
tatagacagttaagttcgatgagcgctttcttttaa
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