Cryptococcus deneoformans JEC21: CNC05460
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Entry
CNC05460 CDS
T00243
Name
(RefSeq) 3'-5' exoribonuclease, putative
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cne
Cryptococcus deneoformans JEC21
Pathway
cne03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNC05460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cne03019
]
CNC05460
Messenger RNA biogenesis [BR:
cne03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CNC05460
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
CNC05460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_TTP_bind
CNOT1_HEAT
ARM_Cnot1
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
3256826
NCBI-ProteinID:
XP_024512465
UniProt:
Q5KJT2
LinkDB
All DBs
Position
3:complement(join(1625454..1625785,1625844..1627398,1627447..1630392,1630432..1630641,1630695..1631234,1631290..1632261,1632337..1632606))
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AA seq
2274 aa
AA seq
DB search
MSIPPPGLGGGVSRTGPPPGFGGGAAHSPVSDASAATMASNAGVAGSVGGGAGRRDGQGG
TAVIVRAQIVFLLTTFTEDSFEKASAEIRTLASTNGPEMYHHFLRRAVVVANPIIQTLIQ
HSNQYKDDPAAPPPQIPTTGQAALVWRLLVTEAARAARDVQLAPHFSFIMLSSSPSTPLP
LPSLRLFNLPPALLFSLSAYTLASPHVFPQNHASYPVFHAILAQTFQPTMELLRSPGVPF
WMMNIPGREPFTDDLTLQEARTLILALFPRAQSPTSGTASRPATPTNPTSPHSSPLNSLQ
RATLLTSLTVKFSSPAIILQTLSALSPGGPPRSPGSIPLEDILFELGESLTQDEGTVEAV
VQRWWVSWLFEGSPEDVRRRVTEEACHVVHGLCEGLPLGRVVDLHGVIKGMSAIDAISWP
DVVKSFDTPMTIAAYPSSIPLLVSLICLPSQAPVPPMAGLLPAHLEAPMWENISSLLSVL
THLTSLAPDAMPIFTMPSAPPPSVYSRIVDPPPSEQVWSKAARQQARDLQGAGLWNTLGL
IQVLVHACALAEMDHNSDREREERADIGRRATEILEKAAKLAPELVLIALEKLPKPLPSP
VVVQQTRLLAMYLSTKPSDITSSALVFHQMWEINPENLLSVLLEFYGEDENNLGRIVEIG
SELKILGKLLAVQDNLHFVLDVAALASNRELLNLERWLADGIEVKGEEFLEAIFDFVEHK
IRLEFEHQHQPENAPPLLFTLGPTVYSIFIRVVRNAPNLAREDIARFKNLRTDILILHPR
LLNLRPHSKQEQGFSEAKFAKDVVDKVDKIYQRMYGGQLKLDDVVEELKAFQKSDDSKEQ
DIFAHALHSLFDEYKFVKSYPPKELTMTGLLFGAIIDYRLVKDTPAFVATRYVLDACKTS
PHEPLYQFGITALSVLRNSLVDFPGLCRSLLEIPALHESHPVLINDIQQALIEREELDLQ
GGVKLAFPALKLPVLIEEGDDEFKEPETGKKDAIMFHVNQIAPTNYEDKAKALLELFEDQ
YSRWFAHYFIDVRVSLEQNRHEIYLQLLQKLGSPLLDRHILWETYRKARELLNSEATINS
ASERAVLKTVAMWLGRITLAQNKPIRMKELSVKDLLIQGYDTKRLIVAIPFVCNLLASCR
DSAVFHPPNPWLVAILRLLSEFYHFGELRLNMKFEIEVLFSKLGIELDSFEPSNLLRMHV
PPPPAQPEIPNRLDLELQRATSELMNGSQRLGDLPGNEAYARIQQLQTEQAVQAAQDALA
RRVDELIAQLPEYLVFNQDYPIFTAPTLKRIVHHSIDRAIREIITPVIERSVTIAGISSR
DLIQKDFGTEPDAIKMRQAAHMMVQNLAGSLALVTCKEPLRSSMIANVKSMLEQNGYTDE
TMPDAMIAGVVNQNLDVACAVLKKAAMEKAAKDIDVNLAPQYAARKAHQNSRSTAPFWDS
ASFGVAISHTALPDPLKLRPGGLTPQQFRVYEDFGEPTRMLSSHPAANGDYLSASYQNLT
LNDGLVPAEIKTGPSPRHGFVQDVVEAPEIVASPRAIPPQTSIDKFHEVAAEIQKIVSQT
HVPSISALPADHELRDLIRGIVIIANQSVHRENTTLAIAQKVVQLLYRSTVQLDREVYVY
LLQQLCDLSAKVDKEVKQWLIYAEDVRKLNVPVTVTLLRAQSIGVQELDVALSHIIIRSY
PSEILDFVTQLIRECSVSDIAFLPRQAFSHSLASLLKAQEDGHATAQVDSLLEELRGPRE
PQSSIEGDHSKTVIDSKLQERLAHYFLEWVRVCSSSKDPEVPFVPYITFLQKEGILSGED
VSSAFYRTAINTAVDLDTAKLTPDGSSRFYGVDALAKLILFIVKNYGDKSGASSVGRAVY
YYNKIITIMSYSLVQRQLAMGDAFNQRPWARFFTSMLSELSTIEYDLPETYIGCLKHLAN
NLGITQPTYAPRFAFGWVSVISHRLFMPKLLSTQRDEGWPEFHRCVMWLLRFLAPFLQSD
DMTPSSRSIFKATIRLLMLLLHDFPEFLVEFYHTLSTVIPPHCTQMRNIVLSAFPHSEAP
LPDYYKRLDQLVAEMQRFPTVRSDYIGALADGNVKAAVDQYVRTGVPTLPSIVAELKNRI
AVKSLGPQGSTAVTWNHTLMHASVFYLGTTAVARTFQQTGVASFDPKTPEVAVLAGLAHA
FDGEGQYYMLNVVADQLRYPSAHTLFFIHFMLFLFGTSVQPELSSTIPERIARILLERTI
VKRPHPWGLLVTFIELLDNEAYGFWKQPFVRAQDEVFRLFGQVRQSVAARRELQ
NT seq
6825 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatccctcctcccggcctgggaggcggggtcagcagaacaggaccgcctccggga
tttggcggcggtgcggcccattctccagttagcgatgcgagtgcggccaccatggcgagc
aatgccggcgttgcgggaagtgttggcgggggtgccggtcgaagagacggtcagggcgga
acagcagtgatcgttagagcacagattgtattcttgttaacgacttttacggaagatagc
tttgaaaaggcctcagctgagatcaggacgcttgcgtctaccaatgggccggaaatgtac
caccactttttaaggcgagcggtcgtggtcgccaacccaattatccaaactctaatccag
cattcgaatcaatacaaggatgaccctgccgcgcctcctcctcagatccctactacgggt
caagctgcgcttgtatggagattgctcgttactgaagcagctagggcagctagggatgtg
cagctcgcgccccatttctccttcatcatgctttcctcctccccatcaactcctcttcct
ttgccctctcttcgattgttcaacctccctcctgcgctgctcttctctctctcagcatac
acacttgcatcacctcacgttttcccgcaaaaccacgcgtcttatcctgttttccatgcc
atcctcgcccagaccttccagcctactatggagcttctacgatcgccaggtgttccattc
tggatgatgaacatccctggaagagagccctttaccgacgatttgactttgcaggaagcc
agaactttgatcctcgcgctcttcccgagggcccagagccctaccagcggcaccgcttct
cgacctgctacacctaccaacccgacttcgccacattcttctcctctcaactctcttcaa
cgtgcgaccctcctcacttctctcaccgtcaagttttcgtctcccgccatcatccttcaa
actttatcagcgttatccccaggtggaccgcctcggtcgcctggcagcattccccttgaa
gacatcttattcgagctgggtgagagtcttacccaagatgagggcactgttgaggctgtt
gtgcagagatggtgggtctcttggttgtttgagggctccccagaagatgtcaggcgaaga
gtcactgaagaagcgtgtcacgttgttcatggtctgtgtgagggattgccactggggcgt
gtcgtagatctgcacggcgtgatcaaaggaatgtcggcgatcgatgctatctcctggcct
gatgtggttaagtcatttgacactccgatgaccattgcggcatatccttcctctattccc
ctccttgtttccctcatatgtcttccatcacaggcgcccgttccacccatggctggtctt
ttgccagctcacctagaagcacccatgtgggaaaacatttcttcacttctctctgtgttg
acgcaccttacgagccttgcgcccgacgcgatgcccatcttcactatgccatccgctcct
ccaccttcagtctactctcgtatcgtcgatcctccgccttccgagcaagtgtggagcaag
gctgctcgtcagcaggcgagagatttgcagggagccgggttgtggaatactttgggtttg
atccaagtattggtgcatgcgtgtgctttggcagagatggaccataattcagacagagaa
agggaagagagggcggatattggcaggagagctacagagattttggagaaggcagccaaa
ttggcgccagagttggttttgattgcgctagagaagcttccaaaacctcttccctccccc
gttgtcgttcaacagactcgtcttttggcgatgtacttgtcaactaaacctagcgatatc
acgtcatctgccctggtattccatcagatgtgggaaataaaccctgaaaatcttttgtcg
gtcttgctagagttctatggggaagatgaaaacaatttgggaagaattgtggagatcggt
tcagagttgaagattcttggcaaacttttggctgttcaggataatcttcactttgtcctc
gatgtggccgctttggcatctaacagagagttgctcaacttggagcgatggttggcggat
gggattgaggttaagggagaagagttcctcgaggctatctttgacttcgttgaacataag
atccgtcttgagtttgagcatcagcatcaacccgaaaacgcgccccctctattgttcact
ctcggtcccactgtatattctatcttcatccgtgtggttcgcaatgctcctaacctcgct
cgtgaggacattgctcgtttcaaaaaccttcgaacggatatactcatccttcaccctcgt
cttctcaacctccgaccgcatagcaagcaagagcaaggtttctctgaagccaaattcgcg
aaggatgttgttgataaggtggacaaaatctatcaacgaatgtatggtggacagctcaag
ttggatgacgtggtggaagagctgaaagctttccaaaagtcggatgacagcaaggagcaa
gacatttttgcgcacgcacttcactcgctctttgacgagtacaagtttgtcaagtcgtat
cctcccaaggagttgaccatgactggtctccttttcggtgccatcattgactatcgactt
gtcaaggacactccggcgtttgttgcgacacgatacgtcttggatgcttgcaagacttct
ccccatgaacccttgtaccaatttggtatcaccgctttgagcgtgctccgtaactctctt
gttgactttcccggtctctgtcgatctcttttagagattcctgctcttcatgagtctcac
cctgttctaatcaatgacattcagcaagcgttgatcgagagggaagagttggaccttcaa
ggaggcgtcaaattggcgtttcctgctctcaaattgcctgtgcttattgaagagggagat
gacgagtttaaagagccagagactgggaagaaagacgccatcatgttccacgtcaaccag
atcgctcctaccaattacgaggataaggctaaagctttgctcgagctatttgaagaccag
tattctcgttggttcgcgcactactttatcgacgtccgagtcagtcttgagcagaatagg
catgagatctacttgcagttgcttcaaaagctcggctcacctcttctcgaccgacacatc
ctctgggagacgtacaggaaagcgagagagttgctcaactcggaggcaacgattaactct
gcttcagaacgagcggttctcaaaacggtggccatgtggttgggccgtatcactctcgct
cagaacaagccaatcaggatgaaagagctttccgtaaaggatctcttaatccaaggttac
gacaccaaacgactcattgttgccattccctttgtctgtaacttgcttgcttcttgcaga
gattcagctgtcttccacccgcccaacccttggttggttgctattcttagacttctttcc
gagttttaccactttggtgagcttagactcaacatgaagttcgaaatcgaagttcttttc
agcaagctcggtatcgaacttgactccttcgagccatccaacctccttcgcatgcacgtc
ccaccaccccctgctcagcccgagatccccaaccgactcgacctcgagcttcaacgtgcc
acaagcgaacttatgaatggttctcagcgacttggagacttgcctggcaacgaggcgtat
gctcgcatccagcagttgcagactgagcaagctgtacaagccgctcaggatgcgttggcg
cgtcgcgtcgatgagcttattgctcaacttcccgagtacctcgtcttcaaccaagattac
cccatctttaccgctccaactctcaagcgtatcgtgcaccactcaatcgacagggccatt
cgtgaaatcattactcctgttatcgagcgttctgtcaccattgctggtatctcttctcgc
gatttgattcaaaaagattttggtaccgagccggatgccatcaagatgcgccaggcggct
cacatgatggtgcagaaccttgccggtagcttggctttagtgacgtgcaaagagccgttg
cgttctagcatgattgccaatgtcaagtccatgctcgaacagaacggttacacggatgag
accatgccggatgcgatgattgcgggtgtagtaaatcagaatttggatgtggcatgcgcg
gtgttaaagaaagccgccatggaaaaagcagccaaggatattgatgtcaatcttgcacct
caatatgccgcgcgaaaggcccaccagaattcgagatctactgctcctttctgggacagt
gcctctttcggtgttgccatctctcacactgctcttcccgaccctctcaaacttcgtcct
ggcggtcttacccctcagcagttcagagtgtatgaagactttggcgagcctacgaggatg
ctgtcatctcatcccgctgccaacggcgattatctgtccgctagctatcaaaaccttact
ctcaacgacggactcgttcctgccgaaatcaagactggcccttcgcctcgtcacggcttt
gttcaagacgttgttgaggctcccgaaattgttgcgtcgccccgtgctatcccgcctcag
actagcattgataagttccacgaggttgcggctgagatccagaagatcgtctcccagacc
catgtacccagcatttcggcccttcctgctgaccatgagcttcgagatcttattcgaggc
atcgttattattgcgaaccagtctgtgcacagggagaacacaactttggcgattgcccaa
aaagttgtgcagctattgtacaggtccacggtacagttagaccgggaggtgtatgtgtac
ttgttgcagcagttgtgcgatttgtcggcgaaggtggacaaggaagtgaagcagtggctg
atctatgcggaggatgtgaggaaactgaatgtccctgttactgtaactcttcttcgcgct
cagtccatcggcgtgcaagagcttgacgttgccctttcccacatcatcatccggtcctac
ccctccgaaatcctcgacttcgtcactcaactcatccgtgaatgctcggtgtctgatatc
gcattccttcctcgacaggctttctctcatagtctagcttcgcttcttaaggctcaggaa
gatggccatgctactgctcaagttgactcattgctcgaagagcttcgtggcccacgagag
cctcagagtagcatcgagggtgatcattccaagactgtcattgacagcaagcttcaggag
agattagctcactacttcttggagtgggttcgagtctgcagctctagcaaggatcccgaa
gttcctttcgtgccctacatcactttcttgcaaaaggagggtatcctcagcggtgaggat
gtgtcatctgcattttaccgcactgctatcaataccgccgtcgatctcgacactgccaag
cttacccccgatggctcatcaagattttacggcgtagatgctttggccaaactcattctg
ttcatcgttaaaaactacggtgacaagagcggagccagcagtgttggtagagccgtctac
tattacaacaagatcattacgatcatgtcgtactctctcgtgcaaaggcaacttgccatg
ggtgatgctttcaaccagcgaccttgggccaggttttttacaagtatgttgagcgagttg
tctactattgagtatgaccttcctgaaacctatatcggctgcttgaagcaccttgccaac
aacctcggcattactcagcccacttacgctccccgtttcgcattcggctgggtctcagtt
atctcccaccgtcttttcatgcctaaactcctctccactcaaagggacgaagggtggccg
gagttccaccgatgcgtcatgtggcttcttcgcttccttgcgcccttccttcagtcagat
gacatgactccctcgtcaagatcaatcttcaaagctactatccgacttctcatgcttctt
ttgcatgacttccccgagttcctcgttgagttctaccatactctctccaccgtcatccct
ccccactgcactcaaatgcgaaacattgtcctttctgcgttccctcattccgaggctcct
ctccccgattactacaagcggcttgatcagcttgttgcggagatgcagcgattccccacc
gttcgctcagactacattggcgcattggccgacggtaacgtcaaagccgccgtcgaccag
tatgtccgaactggcgtccctactcttccttcaatcgtggcggagctcaagaacaggatc
gcggtgaagtctttgggtcctcaaggcagcactgctgtcacgtggaaccacacattgatg
cacgcttcagtattctatcttggtaccactgcggttgctaggaccttccagcaaacgggc
gttgcgagctttgacccgaagactcctgaggtggccgtgttggctggtttagcacatgcg
tttgacggtgaaggccagtactatatgctcaatgtggttgctgatcagcttcgataccca
tccgctcatactcttttcttcatccacttcatgctcttccttttcggtaccagtgtgcaa
cccgagctttcatctaccatccccgagcgtatcgcccgtatccttctcgaacgaaccatt
gtcaaacgccctcatccttggggtctacttgtcactttcatcgagttgctcgacaacgag
gcgtatgggttctggaaacagccatttgtcagggcgcaggatgaggtgttcagactcttc
ggccaggtgcgacagtctgtcgcggcgcgcagggaattgcagtaa
DBGET
integrated database retrieval system
