Cryptococcus deneoformans JEC21: CND02250
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Entry
CND02250 CDS
T00243
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit, putative
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
cne
Cryptococcus deneoformans JEC21
Pathway
cne03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CND02250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cne03019
]
CND02250
Messenger RNA biogenesis [BR:
cne03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CND02250
U7-dependent histone pre-mRNA processing factors
CND02250
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Motif
Other DBs
NCBI-GeneID:
3257191
NCBI-ProteinID:
XP_570295
UniProt:
Q5KIP3
LinkDB
All DBs
Position
4:complement(join(597118..597597,597648..597836,597886..598512,598561..599201,599250..599522,599583..599902,599947..600116))
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AA seq
899 aa
AA seq
DB search
MITLTPLSASAAETSPSEPICYLLELDDARILLDMGQRDYRASSQQCSWDYEEAVRDLAP
TLSLVLLSHSSSNYLSLYPYARARWGLTCPVYATQPTVEMGRVVCLAEAESWRSECPVDS
EKVAADDGSKKPLRGPFVPTVEEIHEAFDWIKAVRYSQPLHLGGDFSHLLLTPFASGHTL
GGSLFKIRSPTSGTVLYAVGINHTSERHLDGMVGVQNGPTGYADGVLRPDLLIVEGGRSM
VVNPKRKEREAALIDTITSTLESNHSVLLPVDPSPRLLELMILLDQHWTFKRTPKVKQRR
YNEPPADLWPYPLCIVSKTAQDMVAFARSLIDWMGGVVKDSAGDMVDVGRGKRARGARMA
LGSEYGVLDFRHVQFFLNTTDLLQTYPLTRPKLVLAVPPTMSHGPSRFLFTAMANTEGNV
IMLTGRSEEQTLARDLYNRWERSQTTGSKWGEGKIGHLTQLEGKLQVEVDSKVPLSGAEL
EAHVESERLQKEKEAAHKAAVDRSRRMLEADDLESDSDSESEADGHAGDITVRRTEGANA
YAGDGEDVRTMSFDIYVKGQQMRSGRGAEMARFRMFPFVERKGRKIDQFGEGLDIGQWMR
KGREIAEEGETEEVREAKKRKEEEEEKAKQAPEPPSKYVSEEVGVELKAMIGFVDMEGLH
DGQSIKTIISDLQPRKLIIVRSSKESTQNLISFLGSVTGFTRDIFSPSLTEEIKIGEHVQ
SYSLTLGDSISSALAKKWSDFEGYEVTFVDGKIVLPAGSTIPILETPSLVGPLVKTEAEG
DDADDEAKPSAEELAAASAPPISSSAPLPLPTSTFIGDLRLARLKHRLSLLNPPIPAEFA
GEGVLVCGPGIAQEAQGAASVVSVRKIGEGKIVLEGCIGRVYVEVRKALYGGLARVDAA
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atgatcactctcacgccgctctctgcctctgcggccgaaacgtccccttccgaaccgata
tgctacctgcttgaacttgacgatgcccggatattgttggacatgggacaacgggactac
cgtgcgagctctcagcaatgcagctgggactatgaagaagcggtgcgggatttggcaccg
actctgtctctcgttttgttgtctcattcctcgtctaactacctctctctctatccgtat
gcccgggcaagatggggtctcacttgcccagtatatgccacacagccaacggtagagatg
gggcgtgttgtatgtctcgccgaagctgaaagctggagatcagagtgtcctgtagattct
gaaaaagttgcggcagatgacgggagtaagaagcctcttaggggcccgttcgtccctacc
gttgaagagattcatgaggcttttgattggattaaagctgtcaggtatagtcagccccta
caccttggtggcgatttttcccatcttcttctcacccctttcgcctctgggcacactctt
ggtgggagtcttttcaaaatacgatcccccacatccggtacagttctctatgccgttggc
atcaaccacaccagcgaaagacatctggatgggatggtaggagtgcagaatgggcctaca
ggctacgccgacggagtcctgcgtcccgaccttttaattgtggaaggaggccgaagtatg
gttgtcaatccaaagcgtaaagaacgtgaggcagcgctcatagatacgatcacttctaca
cttgaatcaaaccattctgtgctccttccggtggacccatcacctcgtcttctcgaactt
atgatccttcttgatcagcattggacattcaaacgcacaccaaaagtcaagcaacgacga
tacaatgaaccgcccgccgatctctggccctacccattgtgcattgtcagtaaaactgct
caggatatggtagcttttgcaaggagtctgatagactggatgggaggtgtggtcaaggat
agcgctggtgatatggtcgatgttggtagagggaaaagagcaagaggagcacggatggct
cttggctcggagtatggagtgttggattttcgacacgtccagttctttctaaacactacc
gacttgcttcaaacatatccactaacgcgtcccaagctcgtccttgccgtaccgcctacg
atgtctcatggtccttcacgctttcttttcacagcgatggcaaatacagaaggaaacgtc
atcatgcttaccggccgcagcgaggaacagacgttggcaagggatctgtacaaccgttgg
gagagatcccaaacaacaggaagcaagtggggagagggtaaaataggtcatttaactcaa
ctcgaaggcaaattgcaagttgaagtggattccaaggttcccctctctggtgccgagctt
gaggcacatgtggagtcggagcgtctgcaaaaagagaaggaagccgcgcacaaagccgcc
gtagaccgttctcgacgtatgcttgaagctgatgatttggaatccgattcggactctgaa
tccgaggctgacggccatgctggtgatataaccgtcagacgaaccgagggtgccaatgct
tatgccggtgatggagaggatgtcagaaccatgagttttgacatctatgttaaaggtcaa
caaatgagaagtggaagaggcgcagagatggcgagattcagaatgtttccgttcgttgag
cgcaaagggcgcaagatcgaccagtttggtgaaggtcttgacattggccaatggatgcgc
aaggggcgagaaatcgctgaagaaggggagacggaggaagtaagggaggcgaagaaaagg
aaggaagaggaagaggaaaaagcgaagcaagcaccggaaccgcccagcaaatatgtgagc
gaagaggtgggggttgaattgaaggctatgatcggtttcgtagatatggaagggttgcat
gatgggcaaagtattaaaaccatcatttcagacctgcaaccgcgaaaactgattatcgtg
cggtcatccaaagaatctacgcagaacctcatatccttcttaggcagcgtgacagggttc
acgagggacatatttagcccatcgctaaccgaagagatcaaaattggtgaacacgtgcaa
tcctactctctgacccttggtgacagcatatcctctgctttggcaaagaaatggtctgac
ttcgagggatatgaggtgaccttcgtggatggcaagattgtccttcctgccggatccact
attccaatcctcgaaaccccctcccttgttggccccttggttaagactgaagcggaggga
gatgatgccgacgatgaagccaaaccatcggccgaagaactcgcagctgcttccgcaccg
cctatctcatcatctgctcccttgcctttaccaacctcaacgttcatcggggacctgcgt
cttgcccgactgaagcatcggctatctcttctcaatcctcccatacccgcagagtttgca
ggtgaaggtgtacttgtttgtggacccggcatagcccaagaggcacaaggagctgcaagc
gtagtctcggtccggaagattggagaaggcaagattgtcttggaaggatgtataggtaga
gtgtacgtagaagttagaaaggcgttgtacggaggtctggcaagagtagatgctgcgtaa
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