Cryptococcus deneoformans JEC21: CND03540
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Entry
CND03540 CDS
T00243
Name
(RefSeq) DNA-dependent RNA polymerase II RPB140, putative
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
cne
Cryptococcus deneoformans JEC21
Pathway
cne03020
RNA polymerase
cne03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CND03540
09124 Replication and repair
03420 Nucleotide excision repair
CND03540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cne03021
]
CND03540
03400 DNA repair and recombination proteins [BR:
cne03400
]
CND03540
Enzymes [BR:
cne01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CND03540
Transcription machinery [BR:
cne03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
CND03540
DNA repair and recombination proteins [BR:
cne03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
CND03540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
MRNIP
Motif
Other DBs
NCBI-GeneID:
3256971
NCBI-ProteinID:
XP_024512654
UniProt:
Q5KIB7
LinkDB
All DBs
Position
4:complement(join(970379..970426,970487..970644,970701..970755,970802..972895,972941..973999,974051..974367,974427..974436))
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AA seq
1246 aa
AA seq
DB search
MDAADDYPLASQPLDDGFTYDPDYDYSQQTAPKGDEDEEKYDVDEDEPISQEDYWTVINS
FFEEKGLVRQQLESFNEFIENTMQEIVDDHSRLTLDQFTQYTGVAGDETRRYEISFGQIY
LARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDIKKRTLTASGVDDPVEADWQPAVGD
DGEVEGAEEEKTSIGKVPVMVRSNFCLLHGLPDDQCHEIGECPYDQGGYFIISGSEKVLI
AQERMATNHVFVFLKAAPARFTYFAEINSQKEKGGRVANHTEVRMYARASGTTGGVIRVS
LPYTKVDIPLVVVFRALGIVPDRDVLSHICFGAEDEALLEMLQPSIEESFAVQDRDTALD
FIGRRGQHEKAPRAQRQRAAFDILHKEFLPHVSTAEGFESKKAYFLGYMVHRLCMAALGR
KELDDRDHFGNKRLDLAGPLMAEMFNVVFGKLREDMYRYLKKCVEQNKEFALNMAIRPNT
ITDGLKYALATGNWGKRDNTRAGVSQVLNRYTFASTLSHLRRTNTPIGRDSKAAKPRQLH
NTHWGMVCPAETPEGSACGLVKNLALMSYISVGSYSAPVMEFLEEWGLEDLSEYQDAPTA
TKVFVNGVWMGIHRDAPTLHNNLLQMRRGGQLKYEVSIVRDIRERELRLYTDAGRVCRPL
FIVDQPTQTLRLKRDHIDRIDQMADEGLLSGAWDKLLSEGIVEYVDAAEEETILIAMTPE
DLVNARTAHSKHELVRDRAAHNLESFDPAARIKSTVWSQQYTHMEIHPSMILGVCASIVP
FPDHNQSPRNTYQSAMGKQAMGVCLTNYQLRMDTMVNVLYYPQKPLATTRSMEYLKFSEL
PAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLYFRSYTDTEKMKGMVKAETIEKP
DRNETLRMKHGTGDRYAKLDVDGLVAPGTNVNGDDILIGKTAPLPEDSEELGQRTQLHTK
RDISTPLKSTEQGVVDQVMLSTNGEGNMFVKIRVRSTRVPQIGDKFASRHGQKGTIGITY
RQEDMPFTAEGLVPDIIINPHAIPSRMTIGHLVECLLSKVSTLTGAEGDATPFTELTVEA
VSKVLRAKGYQSRGFEVLYHGHTGRKLQAQVYFGPTYYQRLKHMVDDKIHARARGPLQIL
TRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERMYDSSDAFRIHVCDVCGLMAVANL
KKQEFYCSVCRNSTQISQVYIPYAAKLLFQELQAMNIACRMYGETD
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atggatgcagcagacgactatccgcttgcatcccagcccctcgacgatggcttcacttac
gatcccgattacgactactctcagcagacggccccaaagggcgacgaggacgaagaaaag
tacgatgttgacgaggatgagccgatcagccaggaggactactggactgttatcaattcg
ttctttgaggaaaaaggtcttgttcgtcaacagctcgaatctttcaatgagttcatcgaa
aacaccatgcaagagatcgtcgacgatcattcgaggttaactttggatcaatttacacag
tatacaggcgttgcaggtgacgaaacaagacgttacgaaatttcctttggccagatctat
ttggctcgggtcaatcatacggagatggatggtagaactaatatgttgttcccgcaagaa
gcgcgtctcagaaacttgacttactcggcgcctctgtatgttgacatcaaaaagaggact
ttgacagcatccggcgttgatgatcctgtggaagctgattggcagcctgccgtgggcgat
gatggtgaggtggaaggtgctgaggaagaaaaaacatcaatcggcaaagtgcctgtcatg
gtccgctccaacttttgcctcctgcatggtcttcctgacgaccagtgtcatgagattgga
gaatgcccttacgatcaaggcggttattttatcatatctggttccgagaaggtcttgatt
gctcaggagaggatggccacaaaccatgttttcgtgttcctaaaggcagcccctgcgaga
ttcacctattttgcggaaatcaactctcaaaaagaaaaaggtggacgggtggcgaatcat
acagaagtcagaatgtacgcaagggcatccggaacaactggtggcgtcattcgcgtatct
cttccctacaccaaagttgacatccccctcgttgtggtctttcgagctttgggtattgtt
cccgatagagacgttctcagccacatctgctttggcgccgaagatgaagcccttcttgaa
atgcttcaacccagcattgaagaatcttttgctgtccaagaccgtgacactgccctcgac
ttcattggtcgccgtggtcaacatgaaaaggcccctcgagctcagcgacagcgtgcggcc
tttgatatccttcataaagagtttttgccccacgtgtctaccgccgaaggatttgagtcg
aaaaaagcgtacttcctgggctacatggtgcataggttatgtatggcggcattaggaaga
aaggagttggatgacagagatcattttgggaacaaaaggttggatcttgctggaccgctg
atggcggagatgttcaatgttgtgtttgggaaattgagggaagacatgtacagatatctg
aagaagtgcgtcgaacaaaacaaggagtttgcccttaacatggctattcgccctaacacg
attaccgacggtctcaaatacgctcttgctacaggcaactggggcaagcgagacaatact
cgagcaggtgtatcacaggttctcaacagatatacttttgcttctaccctctcccatttg
cggcgtactaatacgcccattggacgtgattcaaaagctgctaagccacgtcaacttcac
aacacccattggggtatggtttgtccggctgagacgcctgaaggttccgcatgtggtctg
gtcaaaaatctcgcgctcatgtcttacatttcggttgggtcctattccgctccagtcatg
gaatttttggaagaatggggtctggaagatctttcagaatatcaagatgcgcccactgcg
acgaaagtgtttgtcaatggtgtctggatgggtattcatcgagacgcacccaccttgcac
aacaacctgttgcaaatgcgtcgtggtggccagctcaagtacgaagttagtatcgtccga
gacatccgagagagagaactgcgcttgtacaccgatgcgggacgtgtctgtagaccgctt
ttcattgtcgaccagccgacgcagacattgcgcctcaaacgtgatcacattgacaggatc
gaccagatggcagacgagggtcttttgtcaggagcgtgggataagctattgtccgagggt
attgtcgaatatgtggacgcagctgaggaggagaccatattaatagccatgacgcctgaa
gatcttgtgaacgctcgtactgcacacagcaaacatgagcttgtaagggatagagcagcc
cacaatcttgaatcctttgatcctgcggctcgtatcaagagtacagtgtggagtcagcag
tatacccatatggagatccacccgagtatgattcttggtgtctgtgctagtatcgttcct
ttccccgaccacaaccaatctcctcgaaatacctatcagtctgcgatgggcaaacaagcc
atgggtgtctgcctcaccaactaccagcttcgtatggacactatggtcaatgtactctac
tatcctcaaaaaccgcttgccactactcgttcaatggagtatctcaagttctctgaactt
cctgctggtcaaaacgcaattgttgccatcatgtgttattctggctacaatcaagaagac
tccgtcatcatgaaccaatcttcaattgaccgcggtcttttccgatcgttgtacttccgt
tcctacaccgatactgagaagatgaagggtatggttaaggcggagacgattgagaaaccg
gacagaaatgagacgttaagaatgaagcatgggaccggcgatcggtacgccaagcttgat
gtcgatggtcttgttgctccgggaacaaacgtcaacggtgatgacattctcatcggcaag
actgcacctttgcctgaagacagtgaggagcttggtcaaaggacccaacttcacacaaag
cgagacatatccacaccgctgaagagcacggagcagggcgttgttgaccaagttatgctg
agtaccaacggagaaggtaacatgtttgtcaaaattcgtgtgaggtccaccagagtgccc
caaataggtgataaatttgcctcacgacatggtcagaaaggtactatcggtatcacctat
cgacaagaagacatgcctttcactgcggagggtcttgttcccgatatcatcatcaatccg
catgctattccgtcacgaatgactatcggccatttagtcgaatgtctcttatcgaaagtg
tcaactctgactggagctgaaggagacgctacgcccttcacagagctgactgtcgaagct
gtttccaaagttctgcgagcaaaggggtaccagtctcgcggttttgaggtactttaccat
ggtcatacgggaagaaaacttcaggcccaggtctactttggccctacgtactatcagaga
ctaaagcatatggtagatgacaagattcacgctcgtgcgcggggaccgttgcagatttta
accaggcagccagtagaaggtagaagtagagatggtggtttgcggtttggtgaaatggag
agagactgcatgatttcgcatggtatcgctggatttttaaaagaaaggatgtacgattcg
tccgatgcgttcagaatacatgtgtgcgacgtctgcggtctcatggccgttgccaatctc
aaaaagcaagagttctactgctctgtttgcaggaacagtacccagatctcccaggtgtac
atcccgtatgctgccaaactgttgttccaagagttacaagccatgaacattgcatgtcga
atgtacggggaaacagattga
DBGET
integrated database retrieval system
