Cryptococcus neoformans var. neoformans JEC21: CND04940
Help
Entry
CND04940 CDS
T00243
Name
(RefSeq) conserved hypothetical protein
KO
K12590
exosome complex component RRP46
Organism
cne
Cryptococcus neoformans var. neoformans JEC21
Pathway
cne03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CND04940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cne03019
]
CND04940
Messenger RNA biogenesis [BR:
cne03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CND04940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Mpv17_PMP22
DUF1654
Motif
Other DBs
NCBI-GeneID:
3257398
NCBI-ProteinID:
XP_570419
UniProt:
Q5KHX8
LinkDB
All DBs
Position
4:join(1354109..1354226,1354281..1354960,1355021..1355122)
Genome browser
AA seq
299 aa
AA seq
DB search
MATAGPSRRPDGRTPAQLRPLHLSIGELDRADGSARFAFGSNAVLASCSGPIEVRLREEL
PDKATFEVNHRPLEGVGATPSRALVTTLETIFPPILSLEKHPRSLVQLVVQSLVPSTGRV
VYGSVFGAEGVGAEQNTWPATDKDDYAYIPESRKDAARISPAAGYTFTARAASINASTLA
LLSAGTISILALPVAVALVVTTKGRVMLDPEADEEKQAKARLGFGWAWGAVFGTANEENN
MGVAGQNDGGAELVWIESEGSFTRQEWSEALQMSKTASKAILEFIRIQLDAHLSSHQLS
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgcaggccccagtagacgccccgatggcagaacgcctgcccagcttaggcct
ttgcatctgtccattggtgagctcgatcgtgcagacggctcggctcgcttcgctttcggg
tcaaatgccgtccttgcaagctgctctggtcctatagaggtccgcctccgtgaagaactc
ccagacaaagccacttttgaagtaaatcatcgccctctcgagggcgttggtgcaactcct
tcccgagctcttgtcaccacccttgaaactattttccctcccatcttatcattagaaaag
cacccgagatcccttgttcagcttgtagtgcagagcttagtgccatctacaggtagggtt
gtgtacgggtctgtctttggggcggaaggggtgggagcagagcagaacacatggccggcg
acggataaggacgattacgcctatatcccagaaagtagaaaagatgcagctaggatatct
cctgcagcggggtatacttttactgctcgagccgcctctatcaacgcttcgacattagca
ctcctctccgcgggtacaatatcgatcttagcacttcccgtcgctgtagccctcgtggtg
actaccaaagggagagtgatgttggatccagaagccgatgaggagaagcaggcaaaggcg
agactcgggttcggctgggcctggggtgcagtatttgggacggccaatgaagagaacaat
atgggagttgctgggcagaacgacggtggggcagaacttgtttggatcgaaagtgaaggt
agcttcactaggcaggaatggtcggaagcgctgcaaatgtccaaaacggcctcaaaggca
atccttgaattcattcgaatccaacttgacgctcatcttagttcacatcaactctcatag
DBGET
integrated database retrieval system
