Cryptococcus neoformans var. neoformans JEC21: CND05090
Help
Entry
CND05090 CDS
T00243
Name
(RefSeq) conserved hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cne
Cryptococcus neoformans var. neoformans JEC21
Pathway
cne03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CND05090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cne03019
]
CND05090
03041 Spliceosome [BR:
cne03041
]
CND05090
03009 Ribosome biogenesis [BR:
cne03009
]
CND05090
03016 Transfer RNA biogenesis [BR:
cne03016
]
CND05090
Enzymes [BR:
cne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CND05090
Messenger RNA biogenesis [BR:
cne03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
CND05090
Spliceosome [BR:
cne03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CND05090
Complex C
U4/U6.U5 tri-SnRNP related factors
CND05090
Ribosome biogenesis [BR:
cne03009
]
Eukaryotic type
Pre-60S particles
Helicases
CND05090
Transfer RNA biogenesis [BR:
cne03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
CND05090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
3257284
NCBI-ProteinID:
XP_570437
UniProt:
Q5KHW3
LinkDB
All DBs
Position
4:join(1387302..1387640,1387696..1387950,1388006..1388210,1388262..1389055,1389110..1389374,1389440..1390605,1390667..1390836,1390895..1390907)
Genome browser
AA seq
1068 aa
AA seq
DB search
MSSSAPSDPPLSASSLTVKHKKRSSKDKSGTPSPRPSKTARLDQEDGADDPMDVLEEGKD
GRSRDPMEALEDGAMPKVEDEYEVQAEREVDAAKDFADVTAPGQEAKLKLVHQVRHQVAI
PPDYPYIPINQHKRKDPPARTYKFELDPFQFVSTSCIERNESVLVSAHTSAGKTVVAEFA
IATCLKEGRRVVYTSPIKALSNQKFREFTETFGDVGLMTGDVTINPEASCLVMTTEILRS
MLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPHTVRYVFLSATIPNSMEFAE
WICATHEQPCHVVYTDFRPTPLQHYLFPAGSEGIYLVVDEKSNFRDDNFQKAMAALAQGQ
GEDPANPSGGKGKKGKTKKGGALKGETSDIYKIVQLIMRRNLNPVIIFAFSKRECEDLAM
QMQKFDFNTPDEAATVAQVFESAIGSLSEDDKKLSQIEGILPLLKRGIGIHHGGLLPILK
EVIEILFQEGLIKALFATETFSIGLNMPAKTVVFTSVRKFDGKDFRNLSGGEYIQMSGRA
GRRGLDARGIVIMMCDEKIEPEAAKGMVKGQADRLDSAFHLGYNMIINLMRVEGVSPEYM
LEKCFFQFQNSMSVPVLEKQLKEAEAERDAIVIEREDEIEEYYELRQQLKERGQDFQAVI
THPAYCLRFLQAGRLVEIRDGDKDFGWGVVVAFNKVVNQRGRPPIWTDQDPPQKQYIVDV
LTRVETGASIPRDRSASEISPPSGADKGEVAIIACSLSTVQSISQYRVNLPKDLRGQQEK
NTAFRAVNEIKKRMPDGPPLLDPIKSMGISDKSFVDLVKKIALLENRLQTLEITKSPELP
RLYDLYDRKQKSIQSVKSLKRRINSVHDILQLEELKSRKRVLRRLGFTTADDVVEMKGRV
ACEISTGDELMLTEMMFGGTFGTLAPEQCAALLSCFVFQEKSEAKVRLKEELAVPLRTLQ
ETAKRIAKVSNESGIAIVEDEYVQSFKVEMMDVVLQWCKGAKFSQICEMTDVFEGSIIRC
FRRLQELIRQMGQAAHAIGNTELEEKFAKSMELLERPNTVVFNPSLYL
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcctctgccccaagcgacccgcctctctcagccagtagtctcaccgtaaagcat
aaaaagagatcctccaaagacaagagcggtactccttcccctcggcctagcaaaaccgct
cgtctcgatcaagaggatggcgcagacgatcctatggacgtattggaggaagggaaggac
ggacgatcgagggatcccatggaagccttagaagacggagcaatgcccaaagttgaagac
gagtatgaggttcaagctgaaagagaggtcgacgctgcaaaggactttgccgatgttact
gcccctggacaggaggccaagttgaagcttgtacaccaggtccgacatcaggttgctatt
cctcctgattacccctacatccctatcaatcagcacaagcgcaaagatccgccagcccgt
acctacaaatttgagctggaccctttccagtttgtgtctacttcctgtattgaacggaac
gagtctgttcttgtatcagctcacacttcagctggtaagacggtggtggctgagtttgct
attgcgacatgtttgaaggaagggaggcgagtggtctatacaagtcctatcaaggcgttg
tcgaaccaaaaattcagagaattcacggaaacatttggtgacgttggactgatgaccggt
gatgtgactatcaacccagaggcgtcatgtctggttatgaccactgagattttacggtct
atgctgtaccgtggttcggaagtcatgcgagaggttgcttgggtcattttcgacgaggtt
cattacatgcgagacaaggaacgtggtgtcgtttgggaagagacaatcatccttcttccc
cacaccgttcgctacgtcttcctctcggccaccattcccaactcgatggaattcgccgaa
tggatctgcgcaacgcatgagcagccttgccatgtcgtttacactgatttccgaccgact
ccgctccagcactaccttttcccagccggatcagaaggcatatatctagtcgtggacgag
aaaagcaatttcagggacgacaatttccaaaaagcaatggcagccttagcgcagggtcaa
ggagaagacccggccaatcctagcggcggaaagggcaagaagggcaagaccaagaaaggc
ggcgcattaaagggcgaaacatccgacatctataaaattgttcaactcatcatgcgacgc
aacctcaaccccgttatcattttcgccttttcgaaacgtgaatgtgaagatcttgctatg
caaatgcaaaaattcgatttcaacacacccgatgaagcggctaccgtcgcacaggtgttt
gaaagcgctatcggttccttatcggaggacgacaaaaaactttcgcaaatcgaaggtata
ttacctttgctcaaaaggggcattggaattcatcacggcggattgttgcctattctcaaa
gaagtgatagagatcttgttccaggaaggtttgataaaggctttgttcgcaactgaaact
ttctcaatcggtctaaacatgcccgccaaaacagtcgtattcacgagtgtgcgcaaattc
gatggtaaagatttcagaaacctttctggtggtgaatatatccaaatgtctgggcgagcc
gggcgtcgtggtctcgatgcgcggggtatcgtcatcatgatgtgtgatgaaaagatcgaa
cccgaggcagcgaagggcatggtcaagggccaagcggaccgtcttgattcagctttccat
cttggatacaacatgatcattaatttgatgagagttgaaggtgtgagccctgagtacatg
ctggaaaaatgcttcttccagttccagaattctatgagtgtaccagttttggagaaacaa
ttgaaagaggctgaggccgagagggacgccatcgtgattgagcgcgaggatgaaatcgaa
gagtattacgagctccgacaacaactcaaagaacgtgggcaagatttccaagctgtcatt
acacaccccgcgtactgcctccgcttccttcaggccggtagacttgtcgaaatccgcgac
ggtgataaggatttcggatggggtgtagtcgtcgcttttaacaaagtcgtgaatcaaaga
ggtcgacctccaatttggacggaccaggatccacctcagaagcaatacattgtcgacgtg
cttactcgagtcgaaacaggagcgtccatccctcgagaccgatcggcgtctgagatttcc
cccccttcaggtgccgacaagggtgaggtcgccatcattgcttgttctctctccactgtt
cagtctatcagccaataccgagtcaaccttcccaaagacttgcgcggtcaacaggagaag
aacactgccttcagggcagtcaatgagatcaagaagcgtatgcctgacgggccacctttg
ctcgacccgatcaagagtatgggcatttcggataaatcgtttgtcgatttagtcaagaag
attgcactattggaaaaccgacttcaaactctcgaaatcacaaagtctcctgagcttcca
cgtctctatgacctctacgaccgaaaacaaaagagcattcagtctgtcaaatccttgaaa
cgccgcatcaattctgtgcatgatatccttcagttagaagaactcaagtctcgtaaacgg
gtattgaggaggttgggtttcacaaccgccgacgacgtggtggaaatgaaggggcgtgta
gcgtgcgagatttccacgggagatgagttgatgttgacagagatgatgtttggtggcaca
tttggtacactagcacccgaacagtgtgctgcattgctgagctgtttcgtctttcaagaa
aagtcagaggcaaaggtgaggttaaaggaagagctcgctgtcccacttcgcactctccag
gagacggccaagagaatagccaaggtgtcaaacgaatcgggcattgcgattgttgaagat
gagtatgtgcagagcttcaaggtggaaatgatggatgtagtcttgcagtggtgcaaaggt
gccaaattctctcagatctgtgaaatgaccgacgtctttgaaggttccattatacgatgc
tttagacgattacaagaactcatccggcaaatggggcaagcagcacatgcgatcggtaac
acggagctggaagaaaagtttgcaaagagtatggagcttcttgagagacccaacactgtc
gttttcaacccttcattgtacttgtaa
DBGET
integrated database retrieval system
