Cryptococcus deneoformans JEC21: CND05530
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Entry
CND05530 CDS
T00243
Name
(RefSeq) RNA processing-related protein, putative
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cne
Cryptococcus deneoformans JEC21
Pathway
cne03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CND05530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cne03041
]
CND05530
Spliceosome [BR:
cne03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
CND05530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
PRP4
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
ANAPC4_WD40
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_Vps41
WD40_like
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_DCAF12
WD_LRWD1
WDR54
Motif
Other DBs
NCBI-GeneID:
3257287
NCBI-ProteinID:
XP_570547
UniProt:
Q5KHR9
LinkDB
All DBs
Position
4:complement(join(1497328..1497778,1497852..1497959,1498036..1498248,1498312..1498589,1498653..1498820,1498883..1498996,1499059..1499243,1499283..1499301))
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AA seq
511 aa
AA seq
DB search
MDLDDLITDNTYQLGGIDDERERAQNAAIIEELERKKRLRKLAVPTDDKKVRERLRAYGE
PITLFGEGPGDRRDRLKYVQEQIEQAKGEGGMVIDESEESSDEDEEGEFYTEGADDLLEA
RRKIARYSLSKARARIARQRREYSVPLGKLVNARKELFKELKSFNNFGSQFGDDRPLSTI
RFSPSSQYVLTTSWTGDTKLWDLPNLNPISTKRGHTEKVGGAAWHPFATVGASEEAVNFA
TGGGEGDVKLWSLSGEKPLSTLSGHTSRVGRLAFHPSGAYLASAGFDGTWRLWDVESSKE
LMIQEGHSKEVYALGCQDDGALIASGGFDAIGRVWDLRTGRTAMVLDGHVKEILAMDFAP
NGYQIATGSGDDTVRIWDLRALKTQYIIPAHKSSVADVKFFRSSGEMPPVGIQGLPLSSR
SANVDGMDVDKSNDTEDNEKEEKLSRSGMFLVTAGFDCNVRIWSADEWNMVRNLSTDAGK
VMSVDVSGDGKFVASASYSRSFHLFGGENSL
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atggacttggacgacctcatcacagacaacacctaccagctcggcggcatcgacgacgag
cgggaaagagcacagaatgccgccatcatagaagagctcgaacgcaagaagaggttgcgc
aagcttgccgtccccacagacgacaagaaggtcagggagaggctcagggcgtatggagag
ccgatcacgctctttggtgaaggacctggagacagacgagaccgattaaagtatgtacag
gagcaaatcgagcaggcgaaaggggagggcggaatggtcatagacgaatcggaggagagc
agcgacgaagatgaagagggagaattctatactgaaggcgcagacgatttactcgaagct
cgtcgaaagattgcaaggtattctttatcaaaggccagagcacgaatagctcgtcagaga
agagaatacagcgttcccctgggaaaactcgttaatgctcgaaaggaattattcaaagag
ctcaaatcattcaacaactttggctcccaatttggagatgaccgtcccttatccaccatc
cgtttttcaccatcctcccaatatgtcctcacgacctcttggaccggcgacacgaagctt
tgggatctaccgaacctcaatcccatctctacaaaaaggggacacacggaaaaggtcgga
ggagccgcttggcatccgtttgcgacagtaggagccagtgaagaagctgtcaactttgcg
actggaggaggcgaaggcgatgtaaagctttggtctttgtccggtgaaaaacctctatcg
accctttcaggtcacacatcgcgagttggtcgactcgcttttcatccttctggagcctac
ctcgcttccgcaggttttgacggtacatggcgtctctgggacgtcgagtcgagtaaagag
ttgatgatacaagagggtcatagtaaagaggtctacgctttgggttgtcaggatgatggg
gcattgattgcttctggaggattcgatgccattggtagggtatgggacttgagaactgga
cgaactgctatggtcttggatggccatgtcaaagaaatacttgctatggactttgctccc
aatgggtaccaaatagcaacaggatcaggtgacgataccgtccgtatctgggatctgcgt
gcactcaagacccaatacatcatccccgcgcacaagtctagtgtggccgacgtcaaattc
tttagatcttccggtgaaatgccaccggtcggcattcagggattgccgctctcgtcccgc
tcggcaaacgttgatggtatggacgtggataagagcaacgatacagaagacaatgaaaag
gaagaaaagctgagtcgttccggcatgttcctcgtcacagccggatttgactgcaatgtc
cgtatctggtctgcagacgaatggaatatggtgcgcaacttgtcgacggatgcgggtaag
gtgatgagtgtggatgtctcgggagatgggaaatttgtggcgagtgcaagctatagtcga
tcgttccatctgtttgggggagagaactctttgtag
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integrated database retrieval system
