Cryptococcus deneoformans JEC21: CNE00360
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Entry
CNE00360 CDS
T00243
Name
(RefSeq) hypothetical protein
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
cne
Cryptococcus deneoformans JEC21
Pathway
cne03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CNE00360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cne03019
]
CNE00360
Messenger RNA biogenesis [BR:
cne03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CNE00360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
3257984
NCBI-ProteinID:
XP_024512824
UniProt:
Q5KHE4
LinkDB
All DBs
Position
5:join(85353..85492,85621..85800,85897..86021,86088..86939,87016..87956)
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AA seq
745 aa
AA seq
DB search
MDIDDDDAFLYGDEPEQQPQSIAQAQAQAHAQAEAAKESAISASMAASLAAYGIDASAAV
VEALPENPEDGGVEEEDEGDEDEDEESDEDDVKLVFTGGSSRQLDLRKPQQAPAVVGIGK
WAHASTGAQAPATPSTPQAGQVTGTPTKSNQNDPGQTTEYTPAPRPSASATPQPQSVNAL
ANPPIAPTSQAPNLQPQPSSITSVVTADANGPPTNPNLPPSHLPPVTNPSANPRFDPSNP
SGLIPSSGQSVYDIDLSLFEGSGQPWRQPGAVVSDWFNFGFDEHTFPKWVRYRTEMGENV
KSLAAGGGLGAGAGVGGDTMNQMGMNGMNGMTPQAQAQAQAQAAAAAAAAMQGMGGMGGM
MPNQMQAQMQQMQQMQQMQQMQQMMAMGGMPGMQGMDLGMMGQMGQMGQMGGMGGMGQMG
QMGQMGQMGGRQGVRPNSNLANNAAAGNALANNANPNANTIANSGSGGGQEVKQEEGEHV
EQASANPAFAGRAPPPPGRNMNIAPTPASGAAAVTPNAGAVNPAAATTAATGSANANPNA
STAANVPTGPRAATAVPLGPRAGAGVVPTGPKGRFRDKDRVVDVGSASGGALDYGGGDDV
MPASASNSNAGSGSGSGMKSTSKRDRERERDKESHSRDSRGRDRARDKDRERGEYDEEGY
TSDEKDRERRRRRERSERSDKDKERSDKRKREGGSVSASASLGPGGWEEGEEEEEYVPRE
RERERTRRKRSESEEDEGYRRSKRR
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atggatatcgacgacgatgatgctttcctttatggcgatgagcctgaacagcagccacag
tctatcgctcaagctcaggcgcaagcgcacgcgcaagcagaagcagcaaaggagagtgcg
atcagcgcgtcaatggcagcatccctagcggcatacggtatcgacgcctctgcggccgtt
gtcgaagctctccccgaaaacccggaagatggtggcgtcgaagaagaagatgaaggggat
gaggacgaggatgaggaatccgacgaggatgatgtcaagcttgtgttcactggagggagt
tcaagacaattggatttaagaaaaccacaacaggctccggcggttgttgggattgggaaa
tgggcacatgcgagtacaggtgcacaagcgcctgcgacccctagtacgcctcaagctggt
caggttactggtacgcctaccaaatcaaaccaaaatgaccctggacaaaccaccgaatat
acacccgcacctcgtccttctgcgtctgccacccctcaaccccaatcggtgaacgcgttg
gccaatccccctattgcgcccacttcccaagcacccaatctccagccgcaaccttcctcg
attaccagcgtcgtcaccgccgacgccaacggcccgccaaccaatcccaatctccctcct
tcccacctacctccggtgacgaacccctctgccaacccgcgattcgacccgtccaaccct
tctggcctcatcccttcctctggccagtcagtatacgatattgacctttccttattcgaa
gggtccggccaaccgtggcgtcagcccggcgctgttgtgagcgattggtttaattttggg
tttgatgaacatactttcccgaaatgggtgaggtatcgaaccgagatgggggagaatgtc
aagtcgctcgctgccggtggtggtctcggtgccggagccggggtggggggtgatacgatg
aaccaaatgggtatgaacgggatgaatgggatgaccccacaagctcaagcccaggcccaa
gctcaagcagcggccgcggcagcagcagcgatgcaaggtatgggcggtatgggtggtatg
atgccgaaccagatgcaagcgcagatgcagcaaatgcagcagatgcaacaaatgcagcag
atgcagcagatgatggcgatggggggtatgccggggatgcaggggatggatctggggatg
atggggcagatggggcagatgggacagatgggtggaatgggcggaatggggcagatgggg
cagatggggcaaatgggtcagatgggtgggagacaaggtgtacgacccaacagcaacctc
gccaacaacgcggccgccggcaacgctcttgcaaacaacgccaaccccaacgcgaacacc
atcgcaaactcaggctctggaggaggacaagaagtgaaacaagaagaaggcgaacatgtc
gaacaagcatccgccaatcccgcttttgcggggagggcaccaccgcctcctgggaggaat
atgaacattgcgccgactcctgcttccggtgctgcggctgttactcccaatgctggggcg
gtgaacccggctgctgctacgacggcagcaactggcagtgccaacgccaaccccaacgcc
agcaccgccgccaacgtaccaaccggtccacgggcagcaacagccgtccccctcggccct
cgcgccggcgccggggttgtgcccacaggcccgaaaggaaggtttagggataaggatcgg
gtggtggatgtaggttccgcaagtgggggcgcgttggattatggtggtggggatgatgtg
atgcctgcttctgcttccaactcgaatgcgggctcgggttcgggctcggggatgaagagc
acgagtaaacgtgatcgggagagggagagggataaggagagccacagcagggatagtaga
gggagggatcgggcgagagacaaggatagggaaaggggagaatatgatgaagagggatat
acttcggatgagaaggatagggagagaaggcgaaggagggagaggagtgagcgtagcgac
aaggacaaggagcgtagtgataagaggaaacgggaagggggaagcgttagtgcgagtgcg
agtctgggtccaggaggatgggaggaaggtgaggaggaggaagagtatgtaccacgagaa
agagagagggagaggacgcggaggaagaggtcggagagtgaggaagatgagggatataga
aggagtaagaggagataa
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integrated database retrieval system
