Cryptococcus neoformans var. neoformans JEC21: CNE01200
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Entry
CNE01200 CDS
T00243
Name
(RefSeq) rRNA processing-related protein, putative
KO
K14792
rRNA biogenesis protein RRP5
Organism
cne
Cryptococcus neoformans var. neoformans JEC21
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cne03009
]
CNE01200
Ribosome biogenesis [BR:
cne03009
]
Eukaryotic type
90S particles
Other 90S particles
CNE01200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1
S1_RRP5
OB_RRP5_4th
Suf
HAT_PRP39_C
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
HAT_PRP39_N
TPR_19
ARM_TT21
TPR_17
RPN7
TPR_6
ARM_TT21_5th
SesA
Ribosomal_L17
Motif
Other DBs
NCBI-GeneID:
3257674
NCBI-ProteinID:
XP_570705
UniProt:
Q5KH56
LinkDB
All DBs
Position
5:complement(join(330410..330560,330610..330826,330875..331028,331083..332195,332246..333113,333165..334759,334815..334837,334889..335222))
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AA seq
1484 aa
AA seq
DB search
MAQKKDSQVSKDKSSKKTQNESSSTAPRPAPAFTSTLQNDETDFPRGGGSSLTAFEFKQV
REEGRREAENEAKHQASKGEKRKRQMSDRQAKRLKKNEDAKKKEERDKDNIRVEILNYKR
LVPGTHVLARVHTILPLHLILSLPNNLLAHVPITEISNTLTQLLTAEEAMAVDEGEEESD
DESSAPDLAQLFVPGQYVHAKVLTLYPTASQSFISQYPITETTKLASRVELTLIPEKVNS
EVAKKDLETGYFLVGEVKSEEDKGWIVGVGLNTQGGSSVEGFVSKDEVAKFVPAQALIPG
QLLPATISSIAAGGRVAHLSLNQQDITRSQISEVSTVGSIVPGHSVNALITAVVPSGLNV
KVAGFFDGTIDLAHLPLGEDDIENKYKIGKKIRARVIYDNLAANPHSFALSALPHVLNFT
SPTQEGDNTPLELAIPIGKVYQSVKVTRVLNDWGVMVRTQDGLEGFVHISHLADERIPVL
SNATPQFKAGTLHRARVIGHSPMDGVLLLSFEQSVLSQLFMQVDELKVGQQLKGTIRRLT
DKMLFVNVHGNVDGIVHPTHYADIRLKHPQKRFKPEGSVKARVLYLEPTRNRVVLTLKKT
FLESDLAVPQGFEDLKVGEVTLGSVLKIVDKGVIVELFAGLKAFMPHSECSQTHIKNLSE
AFYIGKPLTVRVITVDASASRIVVSAKQAAPTAPATAAEKLEVGEAVSGTVSQVHTEQVV
VKLDGNGLTALLSLSNLSNQRHTGIEELRRSLKEGEKIDDLVVVSKNPVSGLIIVNIKKT
ITAKKEKAKKEDKAPSGISAHVKAIDAIEVGQIITGTVQEQTSQGYMVQLPNNLRGRVHP
CDSSDDLALAAGHGPLTVGEEVKCYVLDVNRSKRAIDLSTRLSRVQGKENVVDREINTVD
DLKEGESVRGLVKNIAGHGVFVSLGRNVTARIMIKELFDEYVKDWKSRFEINQLVSGKIL
SINPGSNSIEMTLRKNPSKSAKKTALLSLSDFEEGQKVVAVVRKVEAYGMFLKIEGSNVS
GLCHKSEITDNRKADVAQALKGFREGDQVKAKIVSIDTEKGKISFGIKASYFGEEFEGGE
KSEDEDDEVDEENDERFNEGDQEMESDAGESGEGQEHEDEEALEIDGGEEEATSDEEDNA
PQNFKPAPKTALNLGAGFDWTGEAPAAAPESDDESDSDEEAVAPAKSKGKSKAVDLTATA
PSSRPSSTGEYERALLASPNSSFLWIQYMSFHLQLHEIEKARKIGRQALEKISYREEEEK
LNVWMALINLEIAFGTVSATEKVFEEAAQYNDKRTVYMRYAEALQVAGKDEALEELFKKI
VKKFSAYPESWTRFAEFYLNKGDVEAARALLPRSMKSLDKSKHVETIEKMALLEFKQGDA
ERGKTLFEGLVDRFPKRLDLWGVYIDQVAKVGDIQGVRGLMDRALEQKLTSKKAKFLFKK
WLTIEQRIGDAAGQDKAKTRAREWVEANAKKPAQDEEEDSNDEE
NT seq
4455 nt
NT seq
+upstream
nt +downstream
nt
atggcacagaagaaggactctcaagtatccaaagataaatcctccaaaaagacgcaaaac
gagagctcatcaacagctcccagaccagccccagccttcacatcgactctccaaaacgat
gagaccgactttcctcgaggcggcggttccagtttgacagcgttcgaattcaaacaagtc
agagaagaaggaagaagagaagctgaaaatgaggccaagcaccaggcttccaagggcgag
aagagaaaaaggcagatgagcgacagacaagccaagaggttgaagaagaacgaagatgcg
aagaagaaggaggagcgggataaggacaatattcgtgtcgagatcctcaattacaagcga
ttagtccctggcactcacgtcctcgctcgtgtccacactattttgcctctccatcttatt
ctttcccttcccaataaccttctcgctcacgtacctatcaccgagatctctaacacgtta
acccagcttctcactgccgaagaagccatggctgtggacgaaggtgaagaagaatccgac
gacgagtcttccgcacccgaccttgctcagctgtttgttcctggacaatatgtccatgca
aaggttcttactctttacccgaccgctagtcagtcattcatctctcaataccctatcacg
gagaccaccaaactcgcttctcgtgtggaattgactctcatccctgaaaaagtcaactca
gaggttgctaaaaaggatctcgagaccggctacttcctggtaggtgaagttaaatctgag
gaagacaagggatggatagtgggtgttggcttgaatactcagggcggatcttccgttgaa
ggtttcgtttctaaagacgaagtggccaaatttgtccccgcccaggccctcatccccggt
caactccttcccgccaccatctcttctattgcggctggaggccgtgttgcccacctttcc
ttgaaccagcaagatatcactcgttcacagatcagcgaagtgtccactgtcggttctatc
gttcctggccactcagtaaatgctttgatcaccgcggtggttccttctggtttgaatgtc
aaagttgctggtttcttcgacggtactatcgaccttgctcatcttcctcttggagaagat
gacattgagaacaagtacaagatcggtaagaagatccgcgctcgagtcatatatgataat
ctcgccgccaatccccattctttcgctctttcagcccttcctcatgtcttgaactttacc
agccctacccaagagggcgacaatactcctctcgaactcgctatccccatcggtaaagtg
tatcaaagcgttaaggtcactagggttttaaatgactggggtgtcatggtcaggactcag
gatggtttggaaggctttgtccatatcagccacttggccgatgagcgtatccctgtgctt
tctaacgccacccctcaattcaaagccggtaccctgcaccgagctcgtgtcattggtcac
tctcccatggatggtgtgcttctcctctcatttgaacaatctgtcctttctcaacttttc
atgcaagtcgacgagctcaaggtcggtcagcaattgaagggtactattcgtcgattaacc
gataagatgttgttcgtcaacgtccatggcaatgtcgatggtatcgttcaccccactcat
tacgccgacatcagattgaaacacccccaaaaaaggtttaagccagaaggttctgtcaag
gctcgtgttctctacctcgagcccaccaggaacagagttgtcttaactttgaaaaagacc
ttcctcgagtcagatttggcagtccctcagggctttgaagatctgaaggttggagaagta
acccttggatccgtgttgaaaatcgtcgataagggtgtcattgtagagttgttcgctggt
ttgaaggccttcatgccccattcagagtgcagtcaaactcacatcaaaaatctttctgag
gcgttctacattggcaagcccctcaccgtccgtgtcatcaccgtggacgcctctgcttct
cggattgttgtctctgccaagcaagctgctcctactgcacccgcaactgctgctgagaag
cttgaggttggcgaggccgtctctggtaccgtctctcaagttcacactgagcaagtcgtc
gtgaagcttgatggcaacggtttgactgcattgttgagtttaagcaacttgagtaaccag
aggcatacaggcattgaggagctccgaagaagtctcaaggaaggggagaagattgatgac
ttggttgtcgtgtccaagaatcccgtctctggtttgatcattgttaacatcaagaagact
attactgcgaagaaggagaaggcgaagaaggaggacaaagctccgtctggtatttcggcg
catgtcaaggctattgatgcaattgaagttgggcagatcatcaccggaaccgttcaagaa
caaacttctcagggatacatggtccagcttcccaacaaccttcgtggccgtgtccacccc
tgcgactcctctgacgacctcgccctcgccgccggccatggccctctcacagttggcgaa
gaggtcaagtgttatgtgcttgatgtcaataggtctaagcgcgccattgacctctctaca
cgtctttctcgagtgcaaggcaaggaaaacgtagttgacagggaaatcaacaccgtggat
gacttaaaagaaggtgagagcgttagaggtttggtcaagaacattgctggacacggagtc
tttgtttctttgggaaggaatgttaccgcgagaatcatgatcaaggaactctttgatgaa
tatgtcaaggattggaaatctcgtttcgaaatcaaccaactcgtctctggcaagattctt
tccatcaatcccggatccaactctatcgagatgaccctccgtaaaaacccttcaaaatct
gcgaagaagaccgctttgctttctctttccgattttgaagagggtcaaaaagtcgttgct
gttgtaaggaaggtcgaagcttatgggatgtttttaaagatcgaaggttcaaacgttagt
ggattgtgccataagagtgaaatcacagacaacaggaaggcggatgttgcacaggccctc
aagggcttcagagagggtgatcaggtgaaggctaagattgtctctattgatacggagaag
ggaaagatctcgttcggcatcaaggcgagctattttggtgaagagttcgaaggtggagag
aagagcgaagacgaagatgatgaggtcgacgaagagaatgatgagcggttcaatgaaggg
gatcaagagatggaaagtgacgccggagaatcgggagaaggacaggaacatgaggatgag
gaggcactggaaattgatggaggagaagaagaggcaacgtccgacgaagaagataacgcc
ccccagaactttaagcccgctcctaaaactgctttgaaccttggtgccggtttcgattgg
accggtgaagctcccgctgctgcccctgaatcagacgatgagtctgattctgatgaagag
gctgttgctcctgccaaatccaagggcaaatcaaaagctgttgaccttactgctaccgct
ccttcttctaggccttcatccacaggagaatatgagcgtgctctccttgcttcccccaat
tcctccttcctctggattcagtacatgtctttccaccttcagcttcatgagattgagaaa
gcaaggaaaattggcaggcaagctttggagaaaatctcgtaccgagaagaagaggagaaa
ctgaatgtttggatggccctgatcaatttggagatcgctttcgggaccgtgtctgcaact
gagaaggtattcgaagaggcggctcaatataacgataaacggacggtgtacatgcgatat
gctgaggctttgcaagtagccggaaaggatgaagcgcttgaggaactcttcaagaagatt
gtcaagaagttctctgcctaccctgaatcctggactcgttttgctgaattctacctcaac
aaaggtgatgtagaagcggctcgagcacttttaccaaggagcatgaagtcgctcgacaag
tctaagcatgtcgagaccatcgaaaaaatggctctcctcgaattcaagcaaggtgacgca
gagcgaggcaagactcttttcgaagggcttgttgacagattccccaaacgtctcgatctc
tggggtgtctatatcgatcaagttgctaaagtgggagatatccaaggtgtgagaggcttg
atggacagagctcttgagcaaaagttgactagcaagaaagccaagttcctgttcaagaag
tggttgactatcgaacagagaataggcgatgcggctggtcaggacaaggcgaaaacaagg
gcgagagagtgggtcgaagctaatgccaagaagcctgcccaagatgaggaagaagatagt
aatgatgaggaataa
DBGET
integrated database retrieval system
