KEGG   Cryptococcus deneoformans JEC21: CNE01310
Entry
CNE01310          CDS       T00243                                 
Name
(RefSeq) spliceosome complex protein, putative
  KO
K12867  pre-mRNA-splicing factor SYF1
Organism
cne  Cryptococcus deneoformans JEC21
Pathway
cne03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cne00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CNE01310
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cne03019]
    CNE01310
   03041 Spliceosome [BR:cne03041]
    CNE01310
Messenger RNA biogenesis [BR:cne03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     CNE01310
Spliceosome [BR:cne03041]
 Complex B
  Other components
   Prp19-related factors
    CNE01310
 Complex C
    CNE01310
SSDB
Motif
Pfam: HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_N HAT_PRP39_C Suf TPR_19 TPR_2 TPR_12 Mad3_BUB1_I ARM_TT21_C
Other DBs
NCBI-GeneID: 3257860
NCBI-ProteinID: XP_570716
UniProt: P0CO08
LinkDB
Position
5:complement(join(359490..359845,359903..360620,360668..360746,360796..361949,361998..362786))
AA seq 1031 aa
MASTSLVDSLTSHFPLTLPIPTPITHPHLIPSADLPVEEDLLHNPENLRSWLSYIHNVKE
KIAADEPAKGGVLSPEEEILGPLASKNARDGLQRLVSIYERAIAVFPTSYKLWKAYYLTR
QSYVLGELTNDAKEARSQQAKRGAAYKTNVRELLDGAEEAHEWTGGLDPVVGYAEWRSLV
ATGERMIMCLPNLPIPWLLHLGVLLHPKCPSVFKNGSYARRAFDRALRTLPPSLHGRVWG
LYLRWAEIVGGDAGERVWRRYLKVDPSLTERHITYLLEAEEPRPLAAAKYLLSIARRAQQ
NLYSSLEGKSPYQLFVDFLELVEKYADQIGMDEEGTLELQRTKRAVEEKVDGEQPQVEGQ
EQQPQEEPASINGRLMRIAGPPVPLEQGKLFKPVNAASAQAPTQLTYDEDTDPSNPRLLD
VEGIVERDGLQVYKDQAGRLWTGLATYWIKRGEFERATATFERGLAAVVTIRDFTQIFDA
YAEFSETMISTLMDALADEDNLEDEDFDAEETEQELDERMKSFEELMDRRPFLVNDVLLR
RNPNEVVEWEKRIALHGDDDAKVVEAYVKALDTINPRKATGPLYPLYVNFAKFYEEGGSK
DDNGEPRNEPDLEQARKIFERATKVPFKAVDELAEVWCEWAEMELRNENYEEAIRLMQRA
TTVPKNTKINYYDDNIPPQSRLFKSLKLWSYYSDLEESIGTVESTKAVYDKIMELKIANA
QVIVNYATFLEENKYFEESFKVYERGIELFHFPIAFEIWNIYLSKFVKRYGGKKLERARD
LFEQALENCPEKFCKPLYLMYAKLEEEHGLAKRAMGIYDRAASTVQDSDKFEMYTIYIAK
ATANFGLPATRPIYERALESLPDKQTAEMCRRFARMERKLGEIDRARAIYAHASQFCDPR
IEPEFWQEWNDFEIETGSEDTFREMLRIKRAVQASFNTETSFIAAQAAAASKGTEKPTDT
SAQEAQDAADPMAAMERELSAAGADGARKGGAPAFVASTLNKTNANGIDEGGEETGEMAN
PDAIVMDEDEF
NT seq 3096 nt   +upstreamnt  +downstreamnt
atggcatccacatccctcgtagacagcctcacttcccacttcccactcacactccccatc
cccacccccatcacccacccacacctcatcccctccgcagacctccctgtcgaagaagac
ctcctgcacaacccggaaaacctccgttcatggctctcctacatccacaacgtcaaggag
aagatcgctgccgatgagcctgccaagggtggcgtgctttccccggaggaggagattctc
gggccgttggcgagcaaaaatgcaagagacggattgcagcgattggtatcgatctacgag
cgagccatcgccgttttcccgaccagctacaagctctggaaagcgtattaccttacccgt
caatcatatgtgttgggagaactaaccaatgatgccaaagaagcgcgatcccagcaagcc
aaacgaggtgccgcgtacaagaccaacgttcgagagcttttagacggagccgaagaagcc
cacgagtggacaggcggtctcgaccccgtggtcggttatgccgaatggaggagcttggtt
gcgaccggtgagaggatgatcatgtgtcttcccaacttgccaattccatggcttcttcat
ttgggcgtcttgttgcaccctaagtgtccttctgttttcaagaacggctcgtacgcgagg
agggcgtttgatagggcgttgaggacgttacctcccagtttgcatggaagagtctggggt
ctatatctccgctgggccgagattgttggcggggacgctggtgagagggtctggagaaga
tacctcaaggtcgacccgagcttaacagaacgacacatcacctatctcctcgaagctgaa
gagcctcgccctctcgctgcagccaaatacctcctttccatcgctcgccgcgcacaacaa
aatctctactcttctctggagggcaaatctccttaccaattgtttgtcgactttttggaa
cttgtggaaaagtatgccgatcagatcggtatggacgaagaaggtacactcgagttgcaa
agaacaaaacgtgcagtggaggaaaaggttgatggggagcagccccaggtggaagggcag
gagcaacagcctcaggaagagcccgctagcatcaacggtcgtctaatgcgcattgcgggc
ccccctgttccacttgagcaaggaaaactcttcaaacctgtcaacgctgcttcagcccaa
gcccccactcaattgacctacgatgaagataccgatccatcaaaccctcgattacttgat
gtggaaggtatcgtcgaaagggatggtcttcaggtctacaaggaccaagctggtcgattg
tggactggtttggctacttattggatcaagagaggagagtttgaaagggccactgcgacg
tttgagaggggtcttgcagctgtggtgactattcgagactttactcagattttcgacgcc
tacgccgaattctcagagactatgatctccactctcatggatgctcttgctgacgaggat
aatcttgaagatgaagactttgacgcggaagagactgaacaggagttggatgagcgaatg
aagagtttcgaagagttgatggaccgccgacccttccttgtcaacgatgtgctcctccgt
cgaaaccccaatgaagtggtcgagtgggaaaagcgtattgcccttcatggcgacgatgac
gcgaaggtcgttgaagcgtacgtcaaggcactcgataccatcaacccccgaaaagctacc
ggacctctctaccccttgtatgtcaacttcgccaagttctatgaagaaggtggaagcaag
gacgacaatggagagccaaggaatgagcctgatttggagcaagcgagaaagatctttgag
cgagccacaaaggtgcctttcaaggcggttgatgaattggcagaggtttggtgcgagtgg
gctgagatggagttgagaaatgagaactacgaggaagccattcgattgatgcagcgggcg
acaactgtccctaagaacaccaaaatcaattattacgatgataacatccctccccagtct
cgacttttcaaatccctcaaactgtggtcctactactctgaccttgaagagtctattggc
accgtcgaatccaccaaagcagtatatgacaagatcatggagctcaagatagccaacgcc
caagtcattgtcaattacgccacgtttttggaggagaacaagtactttgaggaaagtttc
aaggtgtacgagcgaggaattgagctgttccacttccccatcgctttcgagatctggaat
atttacctctccaaatttgttaagcgatacggcggcaagaaactcgaacgtgctcgagac
ttgtttgaacaagccctcgaaaactgccctgaaaagttctgcaagcctctctatcttatg
tacgccaaactcgaagaggagcatggtcttgccaagcgagcaatgggtatctacgaccgc
gctgcgtcgaccgttcaagactctgacaagtttgagatgtacaccatctacatcgccaag
gctactgccaactttggccttcctgccactcgaccaatttatgagcgggccctcgaatct
ttgcctgacaagcagacagcggagatgtgtcgacgattcgcgaggatggaaaggaagctg
ggtgagattgatagggcgagggcgatctacgcgcatgcgagccaattctgtgaccccaga
attgagcccgaattctggcaagaatggaatgatttcgagatcgaaactggatctgaagac
acgttccgggaaatgctccgtatcaaacgagctgttcaagcgtctttcaacaccgagacc
tcgttcattgctgcccaggctgctgccgcgtccaagggtactgaaaaacctactgatact
tcagctcaggaagcacaagacgccgccgaccctatggctgcgatggagcgtgaattgagc
gcggctggtgctgatggcgcaagaaagggtggagcaccggcgtttgtcgcgagtacgttg
aataagactaatgccaacggaattgatgaaggaggagaagaaacaggagaaatggcgaac
cctgatgcgatcgtcatggatgaggatgagttctaa

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