KEGG T00243: CNE02430

Cryptococcus neoformans var. neoformans JEC21: CNE02430

Entry

CNE02430          CDS       T00243

Name

(RefSeq) pre-mRNA splicing factor, putative

K12815

pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:5.6.2.6]

Organism

cne Cryptococcus neoformans var. neoformans JEC21

Pathway

cne03040

Spliceosome

Brite

KEGG Orthology (KO) [BR:cne00001]
09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CNE02430
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cne03041]
    CNE02430
Enzymes [BR:cne01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     CNE02430
Spliceosome [BR:cne03041]
Complex C
  Other components
   Step II factors
    CNE02430

SSDB

Motif

Pfam:

OB_NTP_bind HA2_C Helicase_C HA2_N DEAD AAA_22 AAA_19 Cas3-like_C_2 AAA_30 nSTAND3 ATPase SLFN-g3_helicase AAA_16 T2SSE SRP54 ABC_tran

Other DBs

NCBI-GeneID:

3258001

NCBI-ProteinID:

XP_024512898

LinkDB

Position

5:join(650291..650356,650411..650510,650568..650812,650865..651042,651098..651705,651763..651876,651927..652202,652255..652336,652387..652566,652614..652771,652822..652894,652951..653082,653139..653200,653249..653459,653510..653665,653723..653870,653925..654087,654139..654452,654504..654647,654699..654777,654834..654879,654926..654973,655027..655195,655252..655408)

AA seq 1302 aa
MSARSPRGPATEDEFSHQIAIEMSRIMNQVNPNDLLGKRIVDIAKGNRTGDAFLRAVSTF
GQFPSEPMLSLHTRILAHLSVLQGQNQSGARRRSEHSPPRMLGGRPVGENVEGMDHDDTD
TLAPEPVRKGGLRRADNAPKFKAPATARPSLLGLDKLAAEKRAAAAATADRNGPPSKKAR
KDEGNEDDEQSGGVFKVPTIPIRRDNVRVRPEETPSRGSGLSEEARARLEARRRERNQPS
TGISASTADREHSREGLGDFQRRANRDRWNERGGEREPGQGEYSRDGRGGGNDWGRRQNG
RDGKPWNAAPTPRTSRADRDFDGGSARIPNRGWDETPRGSRGPGGWGKGERTSRGWDQTP
RSARESPEGGGLDLNAKEWEEEQVKLDRDWYSYDDEGAVAADDDHNPFSQWENLERAKEE
ELQAKAVKRQTARQAQFNADNDLWETNRMQTSGVLQRGGVDDDFDDDSDSKVHVLVHDLK
PPFLDGTVAYTKQLDPINPVKDGTSDMALFSKKGSALVRERRERQEREKAAAKAASIAGT
TLGNLMGVKDEPDLGQEGQKDGVTENYKADSQFSSHLKKSEGVSNFAKSRTLKEQREYLP
AFAVREELMGMIRDHQVLVVVGETGSGKTTQLGQFLYEDGYCANGMIGCTQPRRVAAMSV
AKRVSEEMECTLGETVGYAIRFEDCTSKDTKIKFMTDGVLLRESLNEGDLDRYSVIILDE
AHERSLSTDILMGLLRKILTRRRDLKLIVTSATMNAEKFSQFFGNAATYTIPGRTFPVEI
FHSKSPCEDYVDSAIKQVLQIHLSSSQGDILVFMTGQEDIECCCQVIEERLSQLDDPPPL
AVLPIYSQMPADLQAKIFQPTPDGRRKVVVATNIAETSLTVDGILYVVDCGYSKLKVYNP
KVGMDALQITPISQANCGQRAGRAGRTGPGFCYRLYTETAYLNELFASNIPEIQRTNLAN
TVLLLKSLGVKNLLEFDFMDPPPQENILNSMYQLWVLGALDNVGNLTSIGRKMSDFPMEP
SLAKMLIVSVDYQCSSEMLTIVSMLSVPSVFYRPPQRAEESDAAREKFFVPESDHLTLLH
VYTQWKSNGYSDSWCMKHFLHPKLMRKAREVRGQLEDIMKQQKMDLLSVGTDWDIVRKCI
TAGYFHQAARVKGIGEYMNIRTGLPCVLHPTSALYGLGYMPDYVVYHELVLTSKQYMMCV
TSVDPYWLADLGSVFFSIREKNFDALARARANRDFSKKTEMEAEMARQREEMERAKAEKI
KKEAVAKTPRIGGVGVAYTPKSAGIGAGARSSATPRRRAGGI

NT seq 3909 nt +upstreamnt +downstreamnt
atgtccgccaggtcaccaagaggtccagcaaccgaagatgaattttcacaccaaattgct
atcgagatgtcccgaatcatgaaccaggtcaacccaaatgacctccttggtaaacgaata
gtggatatcgcaaaaggcaaccgtactggcgatgcatttcttagagctgtttcgacattc
ggccagtttcctagtgaacctatgctatctcttcacactcgtattctcgcccacctttca
gttctccagggccaaaaccagtcaggcgctcgtagacgatctgagcattccccacctagg
atgcttggtggtcgacccgttggagaaaatgtggagggcatggatcacgacgacaccgat
acattagcgcccgagcctgtaaggaaaggtggcttaagaagagctgataacgcaccgaaa
tttaaggctcccgctacagctcgaccgtcactactgggactggacaagttagccgctgag
aaacgtgcagcagcggccgccactgcagacagaaatggtccgccgtccaaaaaggctcga
aaagatgaaggaaatgaagatgacgaacaatcaggcggtgtcttcaaagtgcccaccatt
ccgattcgaagggataatgtccgggtgcgacccgaggaaacacccagtcgaggatctggc
ctgtcagaagaggctcgcgctcggctcgaagctcgtcgtagggaacgcaatcaacctagt
acgggcattagcgcgagcactgccgatcgcgagcattcaagggagggcctaggggatttc
cagaggagggcgaacagagatagatggaatgaacgaggtggggagagagagccaggacag
ggagaatacagtagagatggacggggaggcgggaatgactggggcagaagacaaaatggt
cgagacggcaaaccgtggaatgcagcaccgacacctcgcacctctcgtgcagacagagat
tttgatggtggtagtgcccgtatccccaatcggggctgggacgaaactccacgcggatcg
cgcggtccaggcggatggggcaaaggggaacgcacatccagaggttgggaccagactccg
agatcggctagagaatcaccggaagggggcgggttggatctcaacgctaaagaatgggaa
gaagagcaagtcaagctggatcgagactggtatagttacgatgatgaaggggcagtggcc
gcagatgacgatcataatccgttctcacaatgggagaatttggaaagagcaaaagaggaa
gaactgcaagctaaggctgtcaaacgtcagactgcccgtcaagctcaatttaatgcggat
aacgacctttgggaaactaaccgaatgcaaacatccggtgttctccaaagaggaggtgtt
gacgacgactttgacgatgactctgattccaaagttcatgttttagtgcatgacctcaaa
cctccctttctggatggtactgtggcatatacaaagcaacttgaccccattaatcctgtt
aaggatggcacaagtgacatggctctcttctctaagaaaggaagcgctttggtaagggag
agaagggaaaggcaggagagggagaaggctgcggcaaaagcagcgtcgatcgcaggtacc
acccttggtaacctcatgggtgtcaaggacgaaccagatctcggtcaagagggtcagaaa
gatggcgtgactgagaattacaaagctgattcacaattttcgagtcatctcaagaaatcg
gaaggtgtctccaactttgcaaagagtcgtactttgaaagagcagcgagaatatttgccg
gcctttgcggtacgagaagagttaatgggaatgatacgagatcaccaagtgcttgttgtc
gttggagagaccgggtcaggcaaaacaactcagctgggacagtttttgtatgaggacggg
tattgcgcgaacggaatgattgggtgcacccaaccacgtcgtgtagctgccatgtctgtg
gccaagcgtgtcagcgaagaaatggagtgtaccctaggtgaaaccgttggctacgctatc
cgtttcgaagactgtacatccaaagatacaaagattaagtttatgacagatggtgtcttg
cttcgagagtcattgaatgaaggcgatttggatcgatatagtgtcatcatccttgatgaa
gcacacgaacgatcattgagtacagatatcctgatgggtcttttgcgaaaaattcttacc
cgccgacgtgatctgaaactcatcgttacctcagctaccatgaatgccgaaaagttctct
caattttttggtaacgctgccacttacactatccctggtcgtaccttccccgttgagatc
ttccattccaagtcaccttgcgaagattacgttgatagcgccattaagcaagtcctccaa
atccacctgtcaagttcgcagggagatattttggttttcatgacaggtcaagaggatatt
gaatgttgctgccaagtcattgaagaacgactgtctcaacttgatgatcccccgcctttg
gctgtgttaccaatctactctcaaatgccagcggacttgcaagcgaagatctttcagcca
accccagatggtcgacgcaaggtcgttgttgctaccaacatcgcggagacttcccttaca
gttgacggcatcctatatgttgtcgactgcggatactcgaagctcaaggtatacaatccc
aaggttggaatggatgctttgcaaatcacgcctattagtcaagccaactgtggccaacgt
gctggtcgtgctggtcgtacaggtcctggtttttgttaccggttgtatactgagacggca
tatctcaacgagctatttgctagcaacatccctgaaatccagaggaccaacttggcaaac
accgttctacttctcaagtcgttgggtgtcaaaaatttactggagtttgattttatggat
cctcctcctcaggaaaacatccttaactcaatgtaccagctctgggtattgggcgcttta
gataatgtgggcaacttgacctctatcggtcgcaaaatgtccgatttcccaatggaacca
tccctcgccaagatgctcattgtctccgttgactatcaatgttcctctgagatgctcacc
atcgtgtcaatgttatctgtgccatcagtgttttacagacctcctcaaagagcagaagag
agcgacgccgccagggaaaaattctttgtgcctgaaagcgaccatctgacgctgttacac
gtttatacccagtggaagagcaatggatatagcgattcttggtgcatgaaacatttcttg
cacccgaaactcatgagaaaggcccgagaagtgcgaggacagttggaagacattatgaaa
cagcaaaaaatggaccttttgtcagtaggaacggattgggatatcgtcagaaaatgtatt
actgctggttacttccatcaggcggcgagagtcaaaggcattggggagtatatgaacatt
cgaacaggactgccttgtgttcttcacccaacttctgcattgtatggtcttggttatatg
cctgactatgttgtgtatcatgagcttgtattaacatccaaacaatacatgatgtgtgtt
acctcggttgatccctattggcttgccgacctcggtagtgtcttcttttcaattagagag
aaaaactttgatgctttggctcgcgcacgagcaaacagagacttcagcaagaaaacagag
atggaagctgagatggccagacagcgagaggagatggaacgagcgaaagctgagaagatc
aagaaggaagcagtggcaaagactcccagaattggcggtgttggagtagcatatacgccg
aaaagtgcaggtattggtgcgggtgcgaggtcatctgcaacaccgagaagacgagcagga
ggcatttaa

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