KEGG   Cryptococcus deneoformans JEC21: CNE03720
Entry
CNE03720          CDS       T00243                                 
Name
(RefSeq) DNA-directed RNA polymerase II largest subunit, putative
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
cne  Cryptococcus deneoformans JEC21
Pathway
cne03020  RNA polymerase
cne03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cne00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CNE03720
  09124 Replication and repair
   03420 Nucleotide excision repair
    CNE03720
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cne03021]
    CNE03720
   03400 DNA repair and recombination proteins [BR:cne03400]
    CNE03720
Enzymes [BR:cne01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CNE03720
Transcription machinery [BR:cne03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     CNE03720
DNA repair and recombination proteins [BR:cne03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CNE03720
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_3 RNA_pol_Rpb1_7 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R AcetDehyd-dimer
Other DBs
NCBI-GeneID: 3257911
NCBI-ProteinID: XP_570943
UniProt: Q5KGG3
LinkDB
Position
5:join(1057176..1057259,1057332..1057425,1057487..1057659,1057720..1057986,1058038..1058605,1058661..1058841,1058897..1058976,1059028..1059049,1059099..1059146,1059198..1059258,1059308..1060423,1060472..1062885,1062939..1063043,1063094..1063241)
AA seq 1786 aa
MTVTFPYSSAPVKQVKEIQFGIMSPEEIKAFSVAKIESTEVLDENGKQKVGGLMDPKMGT
IDRNFKCQTCLEGMSECPGHFGHIELARPVFHQGFIVKVKKILECVCYSCGKLKVDMRDP
MVANAVRRIKAQHRLKAIWALAKDKKHCEPDELDEKDNGDATFEDEYLQEQKAAMKGHGG
CGHEQPVWRKKGLKLMGVWKPTDKGEDEAAEPEERNISPGEVYNILKKITPEDLHIMGLN
ADYARPDWMILTVLPVPPAAVRPSIAVDGGAMRSEDDLTYKLSQIIKFNGVVRRMEAEGV
PPSVVNEQFDLLQYHVCTYMDNDIAGLPRDQQKGGRAIKAIRARLKGKEGRMRGNLMGKR
VDFSARTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLVNNGPATYPGARY
YVKDTGERVDLKYRKSGEPISLQFGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVKLMN
YSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQANKPVMGIV
QDTLCGIRKFTLRDNFLDWLQVQHILLWLPEWDGTIPPPAIFKPKPMWTGKQLLSMTIPK
GINITYKNNEKPSPIDVTDENVLIENGELVHGTIVKNMAGSANNGLVHVIFRELGHIAAR
DFFSAVQRVVNYWLLHFGFSVGIGDTIVDKATMAGITNRMVEAKEAVQKLIQEAEANRMK
PKPGMTIRETLEASIAAELNKARDWTGKTTQDNLKADNNVKQMVVSGAKGSFINISQMSG
VVGQQFVEGKRISFGFRHRSLPHFSRDDYGPESRGFVENSYLRGLTPQEFWFHAMGGREG
LIDTAVKTAETGYIQRRLVKAMEDLKVAYDGTVRNSVNEVVQFLYGEDGMDGAAMEKQSL
DIIRLSDQAFERRYKIDVLGGSGFSKGILQAGIDQSSISLQKLLDEEFAQISEDRRILRS
EIYPDGTPGHPLPVNIQRVIQNSQQIFHIDPRVPSDLDPVYLLEQRDALADRLLVVRGDD
KLSRAAQKNATLVFNMLLRSHLATRRVLEEYHLNREAFDWVIGEVEQIFNKAVVNAAEMV
GTLAAQSIGEPATQMTLNTFHYAGVASKSVTGGVPRLKEIINVAVNIRTPALNVYLEPEY
SKTEEDAHQIMRKLTYTRLRDITATVEIFYDPKLDSTDIEEDKDFVDAFFAIPDEDIRLE
LHSPWLLRLELDRAKVLEGGYEMSQIVDAIAETVGKDVFVIHSEDNAPKLVIRIRVVAEK
EDEELLGDEDMFLKRIEGTLLDQVELGGITGITRVFISEGKQVVVSQNGEYDQEKEWFLE
TDGINLKEVMAVDGVNAFRTYSNNCYEVYETLGIEAARNALYKELNGVIEMGGSYVNYRH
LALLCDLMCSKGALMSITRHGINRTDAGALSRAAFEETVEILLEAAAVGDVDDCKGVAEN
VLLGQMAPMGTGAFDVSLDMNMLKDVIVDHRLPVQNMMAGGMAGGMTPGGAMTPYDNLSP
MWGGDKGALGHAAFSPIQSSANDEGGNFAYMGYGQSPMHGGMSPAGYSPSSPAGYSPTSP
FAVTSPAYSPTSPFAGAAAGAASPWVGRGGYGATSPAYSPTSPQYSPTSPQFSPTSPSFS
PSSPTYSPASPAYGGAGAGNRASPYSPTSPAYSPTSPMGGITSPQYSPTSPRYSPTSPAF
SPTSPSYSPTSPAPFQATSPRYSPTSPQFSPTSPTYSPASPAYSPTSPQYSPTSPAYSPT
SPAYSPTSPAYGGAAPNGGTAQQQNGQARPGWGNTGGYGTSPSWKS
NT seq 5361 nt   +upstreamnt  +downstreamnt
atgacggtcacatttccttactcctctgcgcctgtcaaacaggtcaaggagatccagttt
ggtataatgagcccagaggagatcaaagccttttctgtcgccaaaatcgaatccaccgag
gtcttggatgagaatgggaagcaaaaagttggaggtctgatggatcccaagatgggcacc
atcgacaggaattttaaatgtcaaacatgtctcgaaggcatgtccgaatgtccaggtcac
tttggtcatatcgaacttgctagaccggtttttcatcaaggtttcattgtcaaggtgaag
aagatcttggagtgtgtttgttatagctgtggaaagctcaaggtcgacatgcgagatccg
atggtagcgaatgcggttcgacgtatcaaggctcaacaccgactcaaagccatttgggcc
ctcgccaaggacaagaagcactgtgaacctgatgagctagatgaaaaggacaacggcgat
gccacatttgaggacgaatatctgcaggaacaaaaggcggcaatgaagggtcacggtggt
tgtggtcacgaacaacccgtatggagaaagaagggattaaaattaatgggtgtctggaag
cctaccgacaagggagaggatgaggctgccgagccagaggaacgcaatatttctccaggg
gaagtttacaatatccttaaaaagatcactcccgaggacctgcacatcatgggtctcaat
gccgactatgcccgtcccgattggatgatccttactgttcttcctgtacctcccgcagct
gtccgaccttcgatcgctgtcgacggtggtgccatgcgcagtgaagatgatttgacctac
aagctttcacagatcatcaagttcaacggtgtcgtacgtcgaatggaggcggaaggtgta
ccacctagtgtcgtgaacgaacagttcgacttgcttcagtaccatgtatgtacatacatg
gacaacgacattgccggattgcctagagatcaacagaagggaggtagggccatcaaggct
atcagggcgaggttaaaaggaaaagaaggtcgtatgagaggtaatctgatgggaaagcgt
gtcgacttttcagcgcgaacagttattaccggagaccccaacttgcaattggatcaggtc
ggtgtgcccaagagtatcgccatgactttgacatacccagagcgagttactccatacaac
attgtctatcttcaaacgcttgtcaacaatggtcccgccacctatcctggtgctcgatac
tacgtcaaagacactggagaacgagtcgatttgaagtaccgcaagtcaggtgaaccgatc
agtttgcagtttggttggattgtggaaagacatttgaaggatggagattatgtcttgttt
aaccgacaaccgagtttgcataaaatgtccatgatgtcccatcgagtcaaattgatgaat
tattcaactttccgtttgaacctttcagttacttcgccttataatgctgatttcgacggt
gatgaaatgaacttgcacgttccgcagagtgaagaaactagagcagagttgagtcagatt
gcttgggttcccagacagattgtctcgccccaagcgaacaagcctgttatgggcattgtc
caggacactctgtgtggtattcgtaaattcactctccgagacaatttcctcgattggctt
caagtccagcacattcttctttggcttccagaatgggacggaaccatccccccacccgcc
atttttaagcctaaacccatgtggaccggtaaacagcttttatcgatgaccattcctaag
ggaatcaacatcacctacaaaaacaacgaaaagccttcgcctatcgacgtgacggatgag
aatgtgttaatcgagaatggagagttggtgcacggaacgattgtcaagaacatggcgggt
agcgccaacaacggtttggtgcacgtcatcttccgagaattgggccacatcgcggctcga
gatttcttttcagcggttcagagagttgtcaactattggttattacacttcggtttctcc
gtcggtatcggtgacacgattgtcgataaggcaactatggcgggtatcaccaatcgaatg
gtggaggccaaggaggctgtccaaaaattgatccaagaagctgaagcgaaccgaatgaag
cccaagcccggtatgacaatccgagaaaccctcgaagcgtctatcgccgcagagctcaac
aaggctcgtgattggactggtaagacgactcaggataacctcaaagcggacaacaatgtc
aagcaaatggtggtgtcgggtgccaagggttcgttcattaacatttcccaaatgagtggt
gttgtgggtcagcagtttgttgaaggaaaacgtatctcgttcgggttccgacaccgctca
ttaccacacttctcaagggacgattatggacccgagtctcgaggtttcgttgaaaactcg
tatttgcgtggtttgactcctcaagaattttggttccacgctatgggtggccgagaaggt
ttgattgataccgctgtcaagactgccgagactggttatatccaaagaagattggtcaaa
gcgatggaggacttgaaggttgcttatgacggtactgtgagaaatagtgtgaatgaggtc
gtgcagttcttgtatggtgaagacggtatggacggtgctgcgatggagaagcagagtctg
gatattatccgactctctgatcaagcatttgagaggcgatacaagattgatgttcttgga
ggaagtggcttctccaaggggatccttcaagccggtatcgaccaatcatccatctctctc
caaaagctccttgatgaagagtttgctcaaatctcggaggaccgtcgtatccttcgttcc
gaaatctacccggacggtacccccggtcatcccttacctgtcaacatccaacgtgtcatc
caaaattctcagcaaattttccacatcgaccctcgtgttccctccgatctggatcccgtt
tacttgctcgaacaaagagatgcgttggctgatagactgcttgtggtgcgaggtgacgac
aagctttcaagggctgcccaaaaaaatgctactcttgtgttcaacatgcttttgcgatcc
catcttgctactcgtcgagttctggaagagtaccaccttaacagggaggctttcgattgg
gtcattggagaagtggaacaaatcttcaacaaggctgttgtcaatgctgccgagatggtt
ggtactcttgctgctcagtctattggtgaacctgccactcagatgacactcaacacgttc
cattatgcgggtgtggcgagtaagtctgttactggtggtgttccccgtctgaaggaaatt
atcaacgtcgctgtcaacattcgaactcctgctttaaacgtctatcttgaacccgagtac
agcaagaccgaagaggatgcgcaccagatcatgcggaaattgacatacactcgattgagg
gatattactgccactgttgaaatcttctacgaccccaagcttgactctacggatattgaa
gaagacaaggactttgtggacgcgttctttgcgatccccgatgaagacatcagactggag
ctccattccccttggctattgcgtcttgagcttgaccgagccaaggtgcttgaaggtggt
tatgaaatgtcgcagatcgttgatgccattgccgagaccgtgggcaaagacgtctttgtt
attcactctgaagacaatgctcccaagcttgttattcgtattcgagtcgttgctgagaag
gaggatgaagaactgttgggtgacgaggacatgttcctgaagaggattgaaggcaccttg
cttgatcaggttgagcttggtggtatcactggtattactcgagttttcatctcggaaggc
aagcaggttgttgtctcccagaacggtgaatacgatcaggagaaggaatggttcctcgaa
acggacggtatcaacctgaaggaggttatggctgtcgacggtgtcaatgctttcagaacc
tactccaacaactgttacgaagtctacgagactcttggtatcgaagctgcccgaaacgct
ctctacaaagagctcaacggtgttattgagatgggtggttcttacgtcaactaccgacac
cttgcgctgttgtgtgacctcatgtgtagcaagggcgctttgatgagcatcactcgacac
ggtatcaaccgaaccgatgctggtgctctttcaagagcggcgttcgaagagacagtggag
atcttgcttgaagctgcggctgtgggtgatgtggatgactgtaagggtgttgcggagaat
gtgttgttgggtcagatggctcctatgggtactggtgcttttgatgtttcacttgacatg
aatatgctcaaggatgtcattgttgaccaccgattgccggtgcaaaacatgatggctggg
ggcatggctggtggaatgactccaggaggtgcgatgactccttacgacaacctgtcgccc
atgtggggtggagacaagggagctttgggtcacgcggcattctcgcctatccaaagttca
gcgaacgacgaaggtggcaactttgcttacatgggctatggtcagtcaccgatgcacggc
ggtatgtctcctgcaggttactcaccttcatcgcctgctggatactcgcccacttcacca
ttcgctgttacaagcccggcctacagccctacatctccgtttgcgggtgcggcagccggc
gcagcatccccttgggttggacgaggcgggtacggcgctaccagtcctgcttactctccg
acatctcctcaatattctcccacttctccccagttctctcctacatcaccatccttctct
ccatcttcacccacttactcgccggcttctccagcttatggcggtgcgggtgctggaaac
agggcgtcaccttattctcccacatctccagcttacagcccgacaagcccaatgggtggt
atcacatctccgcaatacagtcctacgagccccaggtacagtccgacaagtccggcgttt
tcacctacaagtccgtcatacagtccaacaagccctgcgcccttccaggctaccagtccg
aggtattctcccaccagtcctcaattctctcccacttcgcctacctactctcctgccagt
ccagcttactcgcctacaagcccccaatattcacctactagtcctgcctacagtccgacg
tcgccggcttacagcccgacatctccagcgtacggcggtgctgcccccaacggcggtaca
gctcaacagcaaaacggtcaggcgagacctggatggggaaataccggagggtacggtaca
tcgcctagctggaagagctaa

DBGET integrated database retrieval system