Cryptococcus neoformans var. neoformans JEC21: CNE05120
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Entry
CNE05120 CDS
T00243
Name
(RefSeq) RNA polymerase II subunit 3, putative
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
cne
Cryptococcus neoformans var. neoformans JEC21
Pathway
cne03020
RNA polymerase
cne03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CNE05120
09124 Replication and repair
03420 Nucleotide excision repair
CNE05120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cne03021
]
CNE05120
03400 DNA repair and recombination proteins [BR:
cne03400
]
CNE05120
Transcription machinery [BR:
cne03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
CNE05120
DNA repair and recombination proteins [BR:
cne03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
CNE05120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_L
RNA_pol_A_bac
MZB
Pico_P2A
Motif
Other DBs
NCBI-GeneID:
3257619
NCBI-ProteinID:
XP_571040
UniProt:
Q5KG24
LinkDB
All DBs
Position
5:complement(join(1438856..1439253,1439319..1439424,1439485..1439667,1439755..1440011,1440105..1440294))
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AA seq
377 aa
AA seq
DB search
MNGYYDPQQHQSTNIEIPQGPTNQPRLLLRNLNETDATFHLSGVELAYANSLRRVMMADV
PTIAIDQVLFMQNTTPLADEMIAHRLGLIPLISRNVSKGLRYTRDCDCDEGCYYCMVTLR
LKVTFSGNDGEQFMRVTSDMLEVVPSPGGPPPPNPYGPPPELSEEDRIIINNRDPEMGQP
IGKGNPTVPPILIAKMGKGQEIDVLCKAYKGIAKHHAKWSPLSTVAFEYDPYNKLRHTTH
WFETDERAEWPLSSNAAFEPPPNPAEPFDYNAVPSTFYFSAESVGSIPVRSVVEQGLDLL
IEGLANVVLGVQKEIGGEEEEGEDGAAADGVVGDGMGVGMGGGLVEPNIPAGIGQDQMAM
AGGYGGYGSQQGYGGSW
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atgaacggatactacgacccccaacaacaccaatcgactaatatcgagatcccgcaaggc
cctacgaatcaaccacgtcttctccttcgtaacctcaatgagacggacgccactttccac
ctttctggcgtggagctcgcctatgcgaacagtctgagaagagttatgatggccgatgtg
cctactatcgccatcgatcaagtcctctttatgcaaaatacaacgcctttagcagacgaa
atgattgcccaccgtttaggtctcattccccttatctcccgtaacgtctcgaagggactt
cgctacactcgagactgtgactgtgacgaaggatgttattactgtatggtaactttgaga
ttaaaggtgactttcagtgggaatgatggagagcagttcatgagggtgacgagtgatatg
ttggaagtggttccgagtcctggtgggcccccgccccccaatccttatggacctccacct
gaactttcagaagaagatcgcatcatcatcaacaatcgtgatcctgaaatgggccagcct
attggaaagggaaatcccactgtacctccgatattgatcgcaaagatgggcaaggggcag
gagattgatgttttatgcaaggcttataagggtatcgcgaagcaccatgccaaatggtct
cccttatcaactgtagcctttgagtatgacccctataacaaacttcgtcatacaacgcat
tggttcgagactgatgaacgtgcggaatggcctctctcttcaaatgccgcgtttgaaccc
cctccaaatcccgcagaaccattcgactacaatgcggtcccgtccacattctacttctcc
gccgaatctgtcggttccatccccgtccgttccgttgtcgaacaaggtctcgaccttctg
atagaaggcctcgcaaatgtcgtgttgggcgtacagaaagagattggtggcgaagaggaa
gagggggaagatggagcggccgcagatggagttgttggggatgggatgggcgtgggcatg
ggagggggtttggtagaaccgaatatacctgcggggataggtcaagatcagatggccatg
gcaggtggatacggagggtacggatctcagcagggttatggaggttcatggtag
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