KEGG   Cryptococcus deneoformans JEC21: CNF00950
Entry
CNF00950          CDS       T00243                                 
Name
(RefSeq) transcription/repair factor TFIIH subunit Tfb3, putative
  KO
K10842  CDK-activating kinase assembly factor MAT1
Organism
cne  Cryptococcus deneoformans JEC21
Pathway
cne03022  Basal transcription factors
cne03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cne00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    CNF00950
  09124 Replication and repair
   03420 Nucleotide excision repair
    CNF00950
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cne03021]
    CNF00950
   03400 DNA repair and recombination proteins [BR:cne03400]
    CNF00950
Transcription machinery [BR:cne03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     CNF00950
DNA repair and recombination proteins [BR:cne03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     CNF00950
SSDB
Motif
Pfam: MAT1 zf-C3HC4_5 zf-RING_5 zf-RING_2 zf-C3HC4 zf-C3HC4_3 zf-C3HC4_2 zf-FPG_IleRS DZR_2 zf-UDP zf-RING_UBOX MIC19_MIC25
Other DBs
NCBI-GeneID: 3258102
NCBI-ProteinID: XP_571505
UniProt: Q5KFQ4
LinkDB
Position
6:join(299613..299792,299846..299934,299984..300136,300185..300258,300320..300942)
AA seq 372 aa
MSRIPPKKLAPSSSTIRRPAQPTHRAPQLKQTGPRGKGHEEGYLYVAGVKDPSKRVTEYR
TEQDVCPICHTDRQFNKNLRLLVSPCYHKMCESCIDRLFTLGPEPCPQCGRILRKVNFAH
QTFEDLKVEKEVSVRRRMADIFNKRRDDFESDRQYDDYLELVEDLTFNLLNEISIPETEA
RIAEWQRQNESIIQANKHKTEEESMSQSKREEIERRAREERMRMIEEAERVERMEDERIK
TEVTQALAKGETKRAREIEIEAREAKRLRAEALFKFVPPSLLSAQPQGDVSHSPLSPSYN
GPFIPIPYSNPDTASWAGWYEAKGEYVDRRSGVMFVREDREGKVRGGGYDLQLFWEMEVR
SAVEALGVEPLV
NT seq 1119 nt   +upstreamnt  +downstreamnt
atgtcccgaatacctccaaagaagctcgctccatcgtcctctaccattcgtagaccagcc
caacccactcatagagcaccccaactcaaacagaccggtcctcgcgggaaaggtcatgaa
gagggatatctctacgttgctggagtcaaggatcctagcaagcgcgttacagagtatcgc
acggaacaagatgtatgccctatctgtcatactgatcgacaattcaacaagaatctgcgg
ttactcgtttctccctgttatcataagatgtgcgaatcgtgtatcgatcgtcttttcact
cttggccctgaaccgtgtcctcaatgcggccgtatccttcgtaaagtaaactttgcgcat
cagacgtttgaagatctcaaagtggaaaaggaagtatcagttcgacgacgaatggctgat
atattcaacaagcggagagatgatttcgaaagtgatcgacagtatgacgattacctcgaa
ctagtcgaagacctcacatttaatcttctcaacgaaatttccattcctgaaactgaagct
cgtatcgctgaatggcaacgccaaaacgaatccatcatccaagccaacaaacacaagacc
gaggaggaatccatgtctcaatccaagcgggaagagattgagcgtcgggcaagagaagag
aggatgaggatgattgaagaggccgagcgggttgagagaatggaggatgagaggataaag
accgaggtgacgcaggcattggcaaagggagaaacgaaacgggcgagggaaatagaaatt
gaagctagagaggcaaaacgattacgcgccgaagcgctcttcaaattcgtacccccgtca
ctcttgtcagcccaacctcaaggagacgtttctcattctccattatcaccgtcatacaat
ggcccgttcatccctataccgtattcgaaccctgataccgcctcttgggccggatggtat
gaggccaagggagagtatgtggatagacggtcgggtgtgatgttcgtcagggaagatagg
gaggggaaagttagaggaggagggtatgacctgcagttgttctgggaaatggaagtaaga
agcgcagtcgaagcactgggcgttgagccgttggtgtaa

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