Cryptococcus deneoformans JEC21: CNF01680
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Entry
CNF01680 CDS
T00243
Name
(RefSeq) conserved hypothetical protein
KO
K12589
exosome complex component RRP42
Organism
cne
Cryptococcus deneoformans JEC21
Pathway
cne03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNF01680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cne03019
]
CNF01680
Messenger RNA biogenesis [BR:
cne03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CNF01680
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
CNF01680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
Motif
Other DBs
NCBI-GeneID:
3258181
NCBI-ProteinID:
XP_571306
UniProt:
Q5KFI0
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All DBs
Position
6:complement(join(495317..495568,495619..496087,496141..496418))
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AA seq
332 aa
AA seq
DB search
MSIPLPALSPAETSYIVTSLAHPSYPTRNDARPLFASRPIQISYGVFPQANGSSQVKLGE
TEVVCGIKLEVIDITGQQIKDQEKWRTKVEVDVTPQAFPSISAPSLSALSTHLTSIVTSH
FIPSIPALPILPNKKYFQPHLHLTVLSSSGNIPSALILAARAAFADLKVPKTKVISWAGE
SGEDAIDGVDVGRGDMSGIKAAIATTKGKGKGKMIARGSEDWDLDMEDGEGVEFLEGREA
LPVLVTLNMVPSSPNIFLDATPQEESACPTRIHLFFKPSSAHDISKPKLCGLRLEGPDGL
DAGRVRGLLEQGASVASELIKEVNRTIPSLDI
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgtctattccactcccagcgctctctccggccgaaacatcttacatcgtcacctctctg
gcacatccctcataccccacaagaaacgatgcccgccctctcttcgcttctaggcccatt
caaatttcctacggcgtatttccgcaagcaaatggtagctctcaggtcaagctgggggaa
acagaggtggtctgtggtataaagctggaggttatcgacattactggacagcaaatcaag
gatcaggaaaagtggagaacaaaagtcgaagttgatgtaacccctcaagcgtttcccagt
atctctgccccatcgctttctgctctttctacccatttaacttccattgtcacttcccat
ttcatcccctccatcccagctcttcccattcttcccaacaagaaatattttcaaccccat
ctccaccttaccgtcctgtcctcctctggtaacatcccctccgccctcatcctcgctgct
cgtgcagcttttgctgacctcaaagttcctaaaaccaaggtcatctcttgggcaggcgaa
tctggagaggatgccattgatggagttgatgttggaaggggagacatgagcggcatcaag
gcagctattgccactaccaaaggaaaaggaaaagggaaaatgattgcgagaggatctgaa
gactgggatctggacatggaagatggagaaggtgttgagtttttggagggaagagaagcg
ttacctgtgcttgtgacattgaacatggtgcccagttctcccaacattttcttggatgct
acacctcaagaagagtctgcctgtcctacccgtatccaccttttcttcaagccctcgagt
gcccacgacatttcaaagcccaaactttgtggtttgcgattagaaggtcctgacggtctg
gatgctggtcgtgtcagagggttgttagagcagggcgcgagtgtcgcgagcgaattgatc
aaagaagtcaacagaactataccaagtctagacatttaa
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