Cryptococcus deneoformans JEC21: CNF01910
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Entry
CNF01910 CDS
T00243
Name
(RefSeq) cleavage/polyadenylation specificity factor, putative
KO
K06100
symplekin
Organism
cne
Cryptococcus deneoformans JEC21
Pathway
cne03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CNF01910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cne03021
]
CNF01910
03019 Messenger RNA biogenesis [BR:
cne03019
]
CNF01910
Transcription machinery [BR:
cne03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CNF01910
Messenger RNA biogenesis [BR:
cne03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
CNF01910
U7-dependent histone pre-mRNA processing factors
CNF01910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
3258305
NCBI-ProteinID:
XP_571518
UniProt:
Q5KFF7
LinkDB
All DBs
Position
6:join(555167..555485,555541..555836,555882..556541,556591..556737,556799..557103,557151..558018,558070..558235,558284..558666,558724..558741)
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AA seq
1053 aa
AA seq
DB search
MSLYADDDPTKALQLTDEQPTLQPPTDPQQALNAALALDSESPEQQEGLQNAALRFEEHP
ERLPEVIPRLLGLITEGGDSLLRFWTLDMIALTVGRSGLMLDVKLHVAQYCLTALNKLLH
SDSVPTIKAVIPILSTIYPILFRLLATSRPSQQVLDLFNVAKSKIISFALDPNARPFNVG
IKAVAWKFVQRVLLAATRAAGSDPRLPQRGAGSNDVNVSHIVPNGCLSASDIEKEGTLLQ
TQLVTHLYSSSDPAILHPLINTLPAIAKMRPTLAPLVVHSLASWTPSALAAAGRSAMEIR
AVDKTVRIAISHLLRHPPLSAHVAQLNDALVRQKARMEAAFLAEASARKERRQNLKHTID
PGAASEAESSEQAAKRAKLDGLGVGSGIGKGPEIDVSGMRLEEVVEVVLSSLRGVSSELL
TGTIENAKRALQENSADAQPLLAAALGISNVVKEEEEEEILNPLDMEDDDDDLLMDGPEP
LMEEEEPTSFTDFVLPAPEPLESSDKEFIFSDTIERIWQTGADLASLPDPKDSDATKLAV
KPKEMWMLLLARLATRGADVKRKVICDFVIADFANRSKFASVWLNEEWYNEKIGVSSPGQ
YLSNLEAIVTAYLPKVDSKDKSLSTFILTLPAIPPSLISTLETICQEPERALVGFLALRD
IVEARPPVRPQALQTLLELCTHPDRKIRVMAIITTVRRWGNDSPMMPFLTKYALGVLWRL
INDDIKSEDVDMEEGEQADEKIQSKFLGEPNADNVQQHVELAFALAKRKQDLLDDIFRLY
PRLEPAVQDVVEAQLMPLIQSLGATEKLLEILRKFPNGADKLVMRVVGVLSAEGSKTLVT
LMKTLLSERDLDPRFVIPIVGDLDKAEIEKQLPRIVSLLGDTDSKDMVKTAFASMLQKMT
PSDLMVALHQEGAPLKLTIEAIGICFSMTTVFRSDVLANAMSRIADLPTIPLIFVRTIIQ
VVTTYKSLAPFVANHILPKLVTKKIWEIPQLWDGFIMLAKRIAPASFGALLQLPKEQLKQ
VVEKQPGLKSGLKGFLSNKPGSKAAMAEIFGDD
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atgtctctctacgcagatgacgacccgaccaaagccctccagctcactgacgagcagccc
actctccaaccgcctacggacccgcagcaagctcttaatgcggctcttgcccttgattca
gagtcaccggaacagcaagaaggccttcaaaatgcggctctaaggttcgaagaacatcca
gaaaggctgccagaagtgataccgcgcttgctggggcttatcacagagggtggagattcg
ttgttgcggttttggacactggacatgattgctttaacggtcggaagaagtggcttaatg
ctggacgtaaagttacatgtcgctcaatactgtttgacggcattgaacaaactgcttcat
tccgactcggtaccgacaattaaggctgtcattcccattttatccaccatatatccgata
ctttttcggctacttgctacttctagaccaagtcaacaagtcttggatctgtttaatgtg
gcgaagtccaaaatcatttcatttgctttggacccaaacgcacgaccatttaatgtcggt
atcaaggctgtagcgtggaaattcgtgcaaagagtgctattggctgctacaagagctgcc
ggatcagatccaaggttaccgcaaagaggagcaggaagcaatgatgtcaatgtatcgcac
attgtgcccaacggctgtctgtctgcttccgatatagaaaaggagggcactcttcttcag
acccagcttgtaactcatctgtactcttcgtcagacccagccatcctccatccgcttatt
aatacccttccggctatagcgaaaatgcggcctacccttgctccccttgttgtacattct
ctggcgagctggacaccctctgctcttgccgctgctggtagatcagctatggaaatccga
gcagtagataaaaccgtgaggattgcaatcagtcatctgcttcgtcacccccccttgtcg
gcgcatgttgcccaactcaacgacgcccttgttcgtcagaaagctaggatggaggccgct
ttcctagccgaggcttcggcgcgtaaagagcgccgtcaaaatcttaagcatacaattgac
ccgggggctgcatccgaggccgaatcaagcgagcaagcagccaaacgggccaagttggac
gggctgggtgtgggaagtggaataggcaaaggacccgagattgatgtgagcgggatgagg
ctcgaagaagtggtagaggttgttctcagcagcctaaggggtgtgagttcggaactcctt
acaggaaccatagagaacgcaaagcgagctctgcaagaaaactcagccgatgcccagccg
ctgttggcagctgcactgggtatcagcaatgtcgtcaaggaagaagaggaagaagagatc
ttgaacccgctggacatggaggatgacgacgacgacttattgatggacggcccagaaccg
cttatggaagaagaagaaccaacatccttcacggatttcgttcttcctgcccctgaacct
cttgagtcgtctgacaaggagttcattttttcagacacaatcgaacgaatatggcagaca
ggtgccgacctcgcgagtctcccggaccctaaagattctgatgcaacgaagttggccgta
aagccgaaagaaatgtggatgctattactagcacggttagcaacaaggggggcagatgtg
aagaggaaggtcatttgcgatttcgtcattgccgattttgctaatcgatcaaaatttgcg
tcggtgtggcttaacgaagaatggtacaatgaaaaaatcggtgtttcttcgcctggccaa
tatctgtccaacctcgaagctatcgtaactgcttacctcccaaaggttgactcaaaagac
aaatctctttcgaccttcatcctgacgcttcccgcgatccctccttctctcatctcgact
cttgagacgatctgtcaagaacctgaaagggctcttgttggatttttagctttacgagat
attgtagaggccaggccacccgtcagacctcaagctctccaaacattattagagctttgt
acacaccctgacaggaaaattcgcgtgatggcgatcatcaccaccgtccggcgatggggc
aatgattctccaatgatgccattccttaccaaatatgcgctcggagttctttggcgactc
atcaatgatgacatcaagagcgaagacgtggatatggaggagggcgaacaggctgacgaa
aagatccagtcaaagttcttgggagaacctaatgcggacaacgtgcaacaacatgtggag
ttagctttcgctcttgcaaagcggaagcaagatttgctagatgacatattcaggctttat
cctcgcctcgagcctgcagtgcaagacgttgtggaggcacagttgatgccattgatccaa
agtctgggtgctactgaaaagctactggagattctgcgaaagttccctaatggagctgac
aaattggtaatgcgcgttgtgggagtgctgagtgcagaaggaagcaagacgctggtaact
ttgatgaagacattgctaagtgaaagagatttggatccgagattcgtgataccgattgtg
ggagatctggacaaggccgaaatcgaaaaacaactccctcgtattgtatccctcctggga
gacacagattccaaagatatggttaagactgcttttgcttcaatgcttcaaaaaatgact
ccatctgatctgatggtcgcattgcatcaagaaggcgccccgttgaagttgactattgaa
gctatcggcatatgtttctctatgaccaccgtttttcgatctgatgttcttgcgaatgcc
atgtctcgcattgctgatcttcctactatccccctcatttttgttcgtactattatccaa
gttgttactacctacaagtcccttgcgcccttcgttgcgaaccacatcctccccaaactc
gttaccaaaaagatttgggaaatcccccaactttgggacggcttcatcatgcttgccaaa
agaatcgctccggccagttttggggctttattgcagctgcctaaagaacagcttaagcaa
gtggttgagaagcagccgggattgaaatcgggcctcaaaggatttttgtcgaacaagcct
ggtagcaaggctgcgatggctgagatcttcggtgatgattga
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