Cryptococcus neoformans var. neoformans JEC21: CNF03920
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Entry
CNF03920 CDS
T00243
Name
(RefSeq) pre-mRNA splicing factor, putative
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cne
Cryptococcus neoformans var. neoformans JEC21
Pathway
cne03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CNF03920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cne03041
]
CNF03920
03009 Ribosome biogenesis [BR:
cne03009
]
CNF03920
Enzymes [BR:
cne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CNF03920
Spliceosome [BR:
cne03041
]
Complex A
U2 snRNP components
U2 related factors
CNF03920
Complex B
CNF03920
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
CNF03920
Ribosome biogenesis [BR:
cne03009
]
Eukaryotic type
90S particles
Helicases
CNF03920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
SRP54
nSTAND3
Flavi_DEAD
T2SSE
Motif
Other DBs
NCBI-GeneID:
3258437
NCBI-ProteinID:
XP_571352
UniProt:
Q5KEX1
LinkDB
All DBs
Position
6:complement(join(1142679..1142888,1142941..1143024,1143071..1143642,1143695..1144672,1144722..1145019,1145071..1145212,1145260..1145327))
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AA seq
783 aa
AA seq
DB search
MSEPPAKRSKMDSTAASENNPYLAHRNEGPSYGGMTNGANGVTGSIDRNEHPLNGMVPRK
VTVDQAKKIMDGDVNPFKNLAPWSNTYKRILEQRKGLPVYQKMQEFLTVFNENQIVVMEG
QTGSGKTTQIPQFVCYSDLPMLRGKMVACTQPRRVAAMSVAKRVADEMDVQLGKQVGYSI
RFEDMTEPGTTFLKYMTDGMLLREAMNDPLLERYSTVILDEAHERTLATDILMGLLKDIA
KRRSDLKIIVMSATLDVAKFQKYFGDTNPTGLAPVVKVSGRTFPVETFFTQEPENDYVEA
AIRTVLFIHQAEDEGDVLLFLTGEEEIEDACRKIRAEGEELANKGMAGPLLVVPLYSSLP
PHQQQRIFDPAPPARKDGLPGRKVVVSTNIAETSLTIDGIVYVVDPGFCKQKVYNPRIRV
ESLLVTPISKASAMQRAGRAGRTRPGKCFRLYTERDFVKELEEQTHPEILRSNLANTVLE
LIKLGIKDLVHFDYMDAPAPETIMRALELLHYLAALDDDGNLTPLGSIMAEFPLDPQLAK
MLIVSPEFGCSNEILSLTAMLSVPNVFMRPASQRKEADLAKAQFTHPDGDHLTMLNVYHA
YKSNEDDAKSWCWQNYLNQRSLAQADNVRTQLKRAMEKFDLELCSTAWEDRNYWNNIRQA
LTCGFFMHVAHKEGEKGSYMTVKDNQVVRLHLSCGLDTTPEWVIYNEFVLTTANFIRTVT
EVRPEWLLEYAPQYFDPETFPANSETRRALQRVLDRKLGKISSSKHGKDGKDKKDKKKKR
KAE
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagccccctgctaaaaggtcaaagatggactctactgcagcttccgaaaacaac
ccctacctcgcccacaggaatgaaggtccttcatacggtggaatgaccaacggcgccaac
ggtgtgactggctctatcgaccggaatgaacaccccttaaacggaatggttcctagaaaa
gtcaccgttgaccaggccaagaagatcatggatggcgatgtaaacccattcaagaacctc
gctccttggtccaacacctacaaaaggattttggagcagcgaaaaggtctacccgtctac
cagaagatgcaggagttccttacagtgttcaacgagaaccagattgtagtcatggaaggt
cagaccggttccggaaagactacccagattcctcaattcgtctgttattccgatctgccg
atgttaaggggcaagatggtcgcctgtacccaacctcgacgggtcgctgctatgagtgtt
gctaagcgagttgccgatgaaatggatgttcaattgggaaagcaggtcggttactctatt
cgatttgaagatatgaccgaacccggaactaccttccttaagtacatgaccgatggtatg
ctcctccgagaagccatgaacgaccccttgctcgagcgatactcaacagtcattttggac
gaagcgcacgagcgtacattggccaccgatatcttgatgggtctcttgaaggacattgcg
aagagacgatcagacttgaaaatcattgtcatgtctgctactcttgatgttgcaaagttc
caaaagtactttggagacaccaaccccaccggcctcgcccctgttgtcaaggtttctggt
cgaactttcccggtcgaaactttcttcacacaagagcccgaaaacgattacgtcgaagct
gccatccgaacagttcttttcattcatcaagcagaagatgaaggtgatgttttgctgttc
ttaactggtgaagaggaaatcgaagatgcttgccggaaaatcagagccgagggcgaagag
cttgccaataagggcatggccggtcctttgctggttgtccctctctattcttcccttccc
cctcatcaacaacagcgaattttcgaccctgctcctcccgcgcgcaaagatggtctaccg
ggacgaaaggtcgttgtttccaccaacattgccgaaacctcccttactattgacggaatc
gtttacgtagttgatcccggtttctgcaagcaaaaagtctacaatcctcgtatccgagtg
gagtccttgttagtcacccctatatccaaggcgtcagcgatgcagcgtgctggtcgtgct
ggccgtacaagacctggcaagtgtttcaggttgtacactgagagggactttgtcaaggag
ttagaggagcagacccacccggaaatcttgaggagtaatttggcaaacacagttttggaa
ttgatcaagcttggtatcaaagatcttgtgcattttgactacatggacgctcctgcaccc
gagactatcatgcgtgctcttgagctgttgcattatcttgcagccctcgacgatgacggc
aacctcacccctctcggttccatcatggccgaattccctctcgatcctcaattggccaag
atgctcatcgtctctcccgaattcggctgctccaatgagatcctgtctctcaccgccatg
ctttcagtccccaatgtcttcatgcgtcccgcctctcaacgaaaagaagctgatttggct
aaggcccaattcacccacccagatggcgatcacctcaccatgcttaacgtttaccacgcc
tacaagtctaacgaagacgatgccaagagctggtgttggcaaaactaccttaaccagcgg
agtcttgcccaggcggacaacgtgcgaacgcagttgaagcgagcgatggagaagtttgac
ttggagttgtgcagtacggcatgggaggacaggaactattggaacaacatccgtcaggcg
ttaacttgtggcttcttcatgcatgtggcgcataaggagggtgaaaagggtagctatatg
actgttaaggacaaccaagttgtacggctgcatctttcttgcggcttagacactacacct
gaatgggtcatctacaacgaatttgtcttgaccactgccaacttcattcgtacagtaact
gaagttcgtcccgaatggcttctcgaatacgctcctcaatactttgaccctgagacattc
cccgccaacagcgaaacccgacgggcgttgcagcgagtgttggacaggaaattgggcaag
atttctagtagcaagcacggaaaggatggcaaggacaagaaggacaagaagaagaagagg
aaggcggagtga
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