KEGG   Cryptococcus neoformans var. neoformans JEC21: CNG00230
Entry
CNG00230          CDS       T00243                                 
Name
(RefSeq) U5 snRNP-specific 40 kDa protein, putative
  KO
K12857  Prp8 binding protein
Organism
cne  Cryptococcus neoformans var. neoformans JEC21
Pathway
cne03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cne00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CNG00230
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cne03041]
    CNG00230
Spliceosome [BR:cne03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    CNG00230
 Complex C
   U5 SnRNP specific factors
    CNG00230
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_EML_2 WDR55 Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_SCAP Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_DCAF4 WD40_MABP1-WDR62_1st Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_HPS5 WD40_like Beta-prop_WDR19_1st TibC_1st Beta-prop_RIG_1st eIF2A
Other DBs
NCBI-GeneID: 3258832
NCBI-ProteinID: XP_571754
UniProt: Q5KEK2
LinkDB
Position
7:complement(join(54822..54897,54962..55329,55381..55671,55719..55828,55875..55947,55998..56204))
AA seq 374 aa
MSVRKSPPTAGPGMALSKRARVEDEADENTMVMTVASSGEGQRKNALIRSVKRTSSLEAP
IVSLSAAHGGEITACVFDPSGQTLAASSVDRSISLWKSYPPHDNYGILPNVHKTAILDIA
YSLDSETIYSGAADGTLISTDLRTGERISRYFAHYGPLNSISVTISGGRELVLTGGDDGI
ARVWDFALDGKDPVAEFDDERDCPVTAVEWSSDGNQCFVGGVDNTIKVWDLRTNKVLYTL
HGHTDTIASLSLSPNGHYLASYALDSALIIYDVRPFSSDPMRVYRSLTGAPAGFEQTLIR
CAWTRHDGGQRIAAGGGDRTVTVWEVETGKVLYKLPGHKGTVTGVDFHPREPIILTGSKD
TNMLLGELDAQDFS
NT seq 1125 nt   +upstreamnt  +downstreamnt
atgtccgtcaggaagtcgccaccgacagcaggcccaggaatggccctctcgaaacgtgct
cgagtggaggatgaggccgacgaaaacaccatggtcatgaccgttgcttcttcaggagaa
ggacagcggaaaaacgctttgataaggagtgtcaagaggacgagtagtcttgaagcgcct
atcgtgtcattgtcggctgctcatggtggcgagattacggcttgtgtgtttgacccttca
ggacagactcttgcggctagttcggtggaccgcagtatttctttgtggaagtcctatccc
ccacacgacaactacggtatccttccaaacgtccataagaccgctatccttgatatcgcc
tattccctcgactctgaaactatctactctggtgctgcagacggcactctcatatctact
gacttacgtaccggtgaacgcatttcccgctactttgcacactatggccccttaaactct
atatccgtcaccatctctggcggtcgagagctcgtgttgacaggtggtgatgatgggatt
gctcgtgtctgggattttgcattggatgggaaagaccctgtggcagagtttgatgatgag
cgagattgtccagtgacagctgtggaatggagttcagacgggaaccagtgtttcgttggt
ggagttgacaacaccatcaaggtatgggaccttcgaacgaacaaagttctctacacgctt
cacggccacaccgataccattgcttccctttctctctcgcctaacggccattacctcgcc
tcctatgctctcgattctgctctcatcatctacgacgtccgacccttttcttccgacccc
atgcgcgtgtacagatctctcaccggcgcaccagcaggttttgagcaaaccctcatacga
tgtgcgtggacaagacatgatggcggacaaagaatagcggcaggaggtggagataggacc
gttactgtttgggaagttgagacgggcaaggtgctgtacaagcttccggggcataaggga
actgtgactggcgtggatttccatcctagagaaccaatcatcttgacaggatcaaaagat
acaaacatgttacttggcgagctggatgctcaagacttctcatag

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