KEGG   Cryptococcus deneoformans JEC21: CNG03240
Entry
CNG03240          CDS       T00243                                 
Name
(RefSeq) conserved hypothetical protein
  KO
K12881  THO complex subunit 4
Organism
cne  Cryptococcus deneoformans JEC21
Pathway
cne03013  Nucleocytoplasmic transport
cne03015  mRNA surveillance pathway
cne03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cne00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CNG03240
  09122 Translation
   03013 Nucleocytoplasmic transport
    CNG03240
   03015 mRNA surveillance pathway
    CNG03240
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cne03019]
    CNG03240
   03041 Spliceosome [BR:cne03041]
    CNG03240
Messenger RNA biogenesis [BR:cne03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     CNG03240
    TREX complex
     CNG03240
Spliceosome [BR:cne03041]
 Complex C
  Other components
   EJC/TREX
    CNG03240
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    CNG03240
SSDB
Motif
Pfam: RRM_1 FoP_duplication PHM7_cyt RRM_occluded Arm-DNA-bind_5 DUF4523
Other DBs
NCBI-GeneID: 3258869
NCBI-ProteinID: XP_572037
UniProt: Q5KDP7
LinkDB
Position
7:complement(join(914937..914963,915012..915184,915428..915451,915489..915618,915670..915879,915951..915989))
AA seq 200 aa
MASKMDIDRPLDEIIATKAKPRRSRQGGAGARRGGAASGATSARARYASTVPKTISAPQP
FSAEVFKIIISNLPSDVTEAAVRDLMQSTVGPVKSVQMSYTATGKSTGIATVVFRNKGDA
RKAHASYHNRMIDNQRPMKVELAIDPNQAQSSLVNRVAPAPVQPQKRRAPASKPRNTRPA
KKTAEQLDAEMAEYKQSSTA
NT seq 603 nt   +upstreamnt  +downstreamnt
atggcttccaagatggacattgaccgacccctcgatgagattatcgccaccaaggccaaa
ccacgtcgttccaggcaaggcggagcaggtgcccggcgtgggggtgctgcgtctggcgcc
accagtgctcgagcgagatacgcttcgacagttcccaagactatatcggctcctcaacca
tttagcgccgaagtattcaaaattatcatcagcaatctgcccagcgatgtgactgaggcc
gctgtccgagatctcatgcagtcgactgtcgggcctgtcaaaagtgtccagatgtcttac
accgctacaggcaagagtactggtattgctacggtagtctttaggaacaagggcgacgcg
aggaaggctcatgcctcttatcacaataggatgatcgacaatcaacgccctatgaaggtt
gagcttgccattgaccccaatcaggcgcaatcttccctcgttaatcgggttgcacctgct
cccgttcagcctcaaaagaggcgcgctcccgccagcaagcctcgcaacacgcgcccggcc
aagaagaccgctgaacagttggatgctgagatggcggaatataagcaatcttcgactgcg
taa

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