KEGG   Cryptococcus neoformans var. neoformans JEC21: CNG03940
Entry
CNG03940          CDS       T00243                                 
Name
(RefSeq) conserved hypothetical protein
  KO
K10610  DNA damage-binding protein 1
Organism
cne  Cryptococcus neoformans var. neoformans JEC21
Pathway
cne03420  Nucleotide excision repair
cne04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:cne00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    CNG03940
  09124 Replication and repair
   03420 Nucleotide excision repair
    CNG03940
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cne04121]
    CNG03940
   03400 DNA repair and recombination proteins [BR:cne03400]
    CNG03940
Ubiquitin system [BR:cne04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     CNG03940
DNA repair and recombination proteins [BR:cne03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      CNG03940
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      CNG03940
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd CPSF_A Beta-prop_RSE1_1st
Other DBs
NCBI-GeneID: 3258568
NCBI-ProteinID: XP_572116
UniProt: Q5KDH7
LinkDB
Position
7:complement(join(1110142..1110298,1110355..1110598,1110654..1110747,1110804..1111079,1111139..1111443,1111495..1111765,1111819..1112281,1112331..1112803,1112852..1113872,1113923..1114245,1114301..1114486,1114538..1114555))
AA seq 1276 aa
MLYIASALTPTPILGSLRTTSLTDNHTSLVVAKPNKIEAWDVTENGLVWRSEIEVWGTVV
GIDQVSIEDSRPHVLILLAPPQAHLLLVTFDITTGKLIITSSTSLTPPTPTLRQAEFFTG
VVAQERVALVSLWIGVLSCLEIELDKGSSGKKKRSSTIPTPEGETRLKIKDNFNINIREH
NLLHLSFLPATLNGPVVTLVWLSASNELRLQARSLSLSAHSFNPLSKSVDLVSPTSRQSI
SEDSDFNAVPFSCPAARRVVPIPSELPNGQRTLLVIGDEHSVLYTLGENSPQSPKAVRRM
SAVSVPASSPRANARRSPQTELSSGNAKRRKSSMGTKTVDNQNEELQWDLRPVWRSRQGF
GTVIAATVIEDHGSGASVVIGDEYGAFTAFGWEFEKGLGAGTDGRVRVLRTYLGASSPPS
SITYLDSSHLFVSSAVADSVLLRLPKVESSSSVSSGKGKGRAVTSPIGDQADKWEVLYEI
GKDRNDTDGGPEILERWMNIAPVKDLCVVKDEGGNLSHLVLASGASESNSLRVVRSGVGL
EELVTIQGLHDVQKMWPLTDSTAIPRLLLSTSTSTILLQLQPEISAIPITDVIFNSETLA
AGILPGAELLAQVTPRGLSLWSDLSVGQLEAQVEVDKETEIVCAQVTADWAVVAKKGGSL
VVFHVSNTGFSPQGTIDVKEEVSAVAISSSSGSSSPIIVISTWMAKTFVYTLSQISNGVD
GLSIQSESSATSLQLRSHPFYPAGIQLLSGLDNGLLHIYDLNTSDSGEAEGLMVKSSKTT
SLGLRPLVLHPCESTHGDEKVISVGLTERMSVIFESKDRIEFSSVNIKNVMAATSVDTSS
GPVFALFSRTSGLSLVKVNSLKKLHVQTCDTGNESISKLTYMDEYKAIACGSTRRTQLRD
GDVEEENFVQIRDGTSLEPLSSFSLRGRELVTSLRSVFLTGRIYLAVGTAFLPADDGEDS
SWDEGNLAVVREGRVLLLEFKEGDAGGGWDIKIKAELATVGAVYALEEIHGFLAVAAGSK
LTIHRLDHNPVELEETSSWASAYVISSLSVLPPSHIRPEGALIVGDGMRSVIVLNVDEGD
GMIYDDERNMATHGVTALGLLKDKGDGVVISDAYSNLLTYRLNQKLERAATFGLHEEVTR
FQSGSLVPTTTAPEIIIPDVLFATREGRLGIIGELGTRSSRTLDDLQRNMSKIWKGPGEV
GWSNWRRAGSNLVGKDTAGFVDGDFVQKFLDTEFFDDERAQEIIQGTSSHEHVRLGKEEA
SRADVVRFLEATAGMH
NT seq 3831 nt   +upstreamnt  +downstreamnt
atgctgtacatagcatctgctctcaccccgaccccgatcttgggtagtctccgtacaaca
tcgcttactgataatcacacatctctcgttgtcgccaaaccgaataaaattgaagcatgg
gacgtaacagaaaatggtctggtatggaggtcggaaatagaggtctggggtacggtagta
ggaattgaccaagtctcaatcgaggattcccggcctcatgtcttaattttgcttgcacct
ccccaagctcatctcctattggtaacctttgacatcactaccggcaagctcataattaca
tcctccacatctcttacaccaccaactccgacgcttaggcaagcagaattcttcacaggg
gttgtggcccaggaacgagttgcactcgtcagcttgtggataggtgtgctgtcatgtctt
gagatagagcttgataagggttcaagcggtaagaaaaaaagaagcagtacaataccgacc
cccgaaggcgaaacaagattaaaaattaaggacaatttcaacatcaatatccgagagcat
aaccttttgcatctgagtttccttccagccaccctaaacggacctgtagtaactctcgtt
tggttgtctgcgagcaatgagcttcgcttgcaagctcgttccctttccctctctgctcat
tcattcaatccactctcaaaatcggtagatctggtatcccctacaagccgacagtccata
tccgaagactcggactttaacgcagtgccattctcttgccccgccgccaggcgtgtcgtc
cccataccttccgaattgcccaacgggcagcgaacacttctggtaattggcgacgagcat
tcggttctttatactctcggcgaaaatagccctcagtcaccaaaggccgtgcgacgcatg
tctgctgtctccgtcccagcctcttctcctcgcgcaaacgctcgtcgaagccctcagaca
gagttgagcagtggcaacgccaaacgccgaaaatccagcatgggtaccaaaactgtggat
aatcagaacgaagaattgcaatgggatcttcgccctgtatggagaagccggcaaggtttc
ggaactgtaatagctgcgaccgtgatcgaagatcatggaagtggggcgagcgtggtaatt
ggagatgagtatggagcttttacagcgttcggatgggagtttgagaagggtttgggggct
ggaaccgacggaagagtaagagtattgagaacttatcttggtgcatcttccccaccctcc
tctataacttacctcgactcttcacatttatttgtatcgtccgccgtagcagactctgtc
ctccttcgcctcccaaaggtggaatcctcgtcaagcgtttcgtcaggcaagggtaaaggc
cgtgcagtaactagtcctatcggagatcaagcggataagtgggaagttttgtatgagatt
gggaaagacagaaacgatacagatgggggcccagagatacttgaaaggtggatgaatatc
gcccctgtgaaagatttatgtgttgtgaaagacgagggtggaaatctgtcacacctagtt
ttggcttctggtgcctccgaaagtaattccctacgagtcgtccgtagcggcgttggtctt
gaagaactcgttaccattcaaggccttcatgacgttcagaagatgtggccgttgacggat
tctactgcaattccgcgtctacttctttccacttctacttccacaatactccttcaactc
cagccggagatctcggccatccccattaccgacgtaatcttcaactcggaaactttggct
gctggaatcctgcctggcgccgagcttttggctcaggtcactccgcgtggtctttcctta
tggtctgacttgagtgttggccagcttgaagcacaagtggaggttgataaggagacggag
atagtttgtgcacaagtgactgcagattgggctgtcgtggctaagaagggaggaagcctt
gtagttttccatgtgtcaaacacaggcttcagtcctcaagggactattgacgtgaaagaa
gaagtgtcagctgttgccatttccagcagctccggttcttcatctcccatcatcgtcata
tctacatggatggccaagacttttgtatatacgctctctcagatttccaatggggtggat
ggtctatctatccaaagcgaatcatctgccacttctcttcaactacgttcgcacccattc
tatccggcgggtatacaacttctttcaggtttggacaacgggttgcttcatatttacgat
ctaaacaccagtgacagcggcgaagcagaaggattgatggtcaaatcttcgaaaaccacc
tccttgggactgcggccattggttctacacccttgtgaaagcactcacggagacgagaag
gttattagtgttggcttgacagagaggatgagtgtaatctttgagtcgaaagatagaatt
gagttttcttctgtcaatataaagaatgtcatggccgctacttcggtggatacttcatca
ggtccagtttttgctctcttctcccgcacttcaggactgtccttggtgaaagtcaattct
ttgaagaagctccatgtacaaacatgcgatactggcaatgaatccatctccaagctgacc
tatatggacgagtacaaggctatcgcatgtgggtcgacaagaaggactcaactcagagat
ggcgatgtggaggaagaaaactttgtgcaaatccgagatggaacaagtcttgaaccacta
tcgagtttctccctccgaggacgcgagctagtcacatccctccgatctgtattcctcacc
ggtcgcatttatctcgctgtcggcacagcatttttacctgcagatgatggcgaagattca
tcctgggatgaaggtaaccttgccgtagtcagagagggtagggttttgctcctcgaattc
aaagaaggtgatgcaggaggcgggtgggatatcaaaatcaaagcagaactagctacggtg
ggtgctgtttatgccctagaggagatccatggtttcttggctgttgcagcggggagcaag
cttacaatccaccgcctggatcataaccccgttgaactggaagaaacatcctcttgggct
tctgcctacgtcatttcctcactttctgtcttaccacctagtcacatccgcccagagggc
gctctcatcgtaggcgacggcatgcgtagcgttatcgtgcttaatgtcgacgagggtgat
ggtatgatctatgatgacgaaaggaacatggctacacatggtgtgacagccttgggtttg
ttgaaagataagggagatggcgttgtcatcagcgatgcatattcgaatctcctgacatat
aggctgaatcagaagcttgaaagggcggcgaccttcgggctgcatgaggaagtcactcgt
ttccaaagtggctcccttgtcccgacaaccaccgctcctgaaatcatcattcccgatgtc
ctattcgctactcgtgagggccgtctcggtatcatcggcgagcttggtaccaggtcttcg
agaaccctggacgatctccagcgtaatatgagcaaaatttggaaaggtccaggagaggtc
gggtggagtaactggaggagagcggggtctaatcttgtgggcaaagatactgcaggattt
gttgacggagactttgtgcaaaagttcctcgacacggaattctttgatgacgagcgcgca
caggaaatcattcaaggaacatcgtcccacgaacatgtcagattaggaaaggaagaggca
tcgcgagccgacgttgtacgctttttggaggctaccgctggtatgcactag

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