| Entry |
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| Name |
(RefSeq) ubiquitin-protein ligase, putative
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| KO |
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| Organism |
cne Cryptococcus deneoformans JEC21
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:cne00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
CNG04260
09124 Replication and repair
03420 Nucleotide excision repair
CNG04260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:cne04121]
CNG04260
03400 DNA repair and recombination proteins [BR:cne03400]
CNG04260
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:cne04147]
CNG04260
Ubiquitin system [BR:cne04121]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Cullin
CNG04260
DNA repair and recombination proteins [BR:cne03400]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
CNG04260
TCR (transcription coupled repair) factors
Cul4-CSA complex
CNG04260
Exosome [BR:cne04147]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
CNG04260
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
7:join(1201146..1201287,1201339..1201628,1201685..1201869,1201924..1202879,1202936..1202996,1203049..1203150,1203247..1203512,1203594..1203772,1203841..1204044,1204138..1204188)
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| AA seq |
811 aa
MSSLVVFPSTTNAFTSYRPSVRAHVDFIKPGSGSQHSTGRIVKLELPSLVQPQATDQLEP
LFKSIDAILAGQPTPLSYQHITAFCQTVVLQDRDAASQLSDKCTSSIDRYTEIIRRELKG
GILAKDRNTLGKLCESWQVWTARTTLLSSLLVHLDKVYHSSFSEPNILRSRAIAKFKSIV
WQDSVIHAVIIDDIFRWLSEERQTGIPSSARPTILAVDKIAQTLQTFGELAIAYQDETHD
YYTSALRNAVSEIEQGKRKAGEYAPWFLAKMVEEENRVRECFHTFTLQLLARDLRKVGQS
ETTDKVIELAVEQAMSNDEAKGFSELYHFSIETDKFASLVKSLENYLAKRVSTLISDPVN
DPRMIDETLKLKRFAEKTVSNLFSEEDTEPLPADEDVKMISVEEKEEREKEKEAAKEKRQ
SVRMRMFELEEAVRSGFKTGMGSRQNAPAEWIAKHLDAAMRKGQGSGTEEQFNNHLDEIV
TLIGFTKDKDVFKAFYSSQLAKRLLLNKSASNDQEKTMVAKLQKELGEEFTSGDVMMKDL
QLSETLVRSYQLAQSRGPAQYGETSNFTANVLTESAWPAYPLLKDGWNFHLTPSLQSSID
DFTSWYTTQHKNRVLSWRFQLATVTLTARFPSGRYEVGVSLFQAVVLLLYNEIESLTFAE
IKERTGIENNELVRTLQSLALGRKGTRVLLKKPSGKEVNPTDIFAWNKGFTSERIKFKIN
QIQQDMSAEESRKTNEQVALDRVSILEATIVRIMKSRKKLTLQLLIDGVVSDVSKRFPPD
VKEIKKRVESLIEREFMARDEEDRSILHYVA |
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| NT seq |
2436 nt +upstreamnt +downstreamnt
atgtcctctctcgtggtgttcccgtctacaacaaatgcattcacctcttacaggccaagt
gtaagagcgcacgtcgactttatcaagcccggaagcggtagtcagcactccacgggtcgc
atcgtaaagctcgagttaccttctttggtccagccacaggccacggatcaacttgagcca
ttattcaaatcaatcgacgcaatattggcaggccaaccaacgccattaagttaccaacac
atcactgcattctgtcagactgtggtccttcaagatcgagacgctgcctctcaactttcc
gacaagtgcaccagctcaattgatcggtatactgaaatcattcgcagggaattaaaagga
ggcattttggccaaagacaggaatacattggggaaattatgtgaaagttggcaagtttgg
actgcgagaacgactcttctcagctcattactggttcaccttgacaaagtctaccatagt
tctttttcggaacctaacatcttgcgatccagagcgattgccaaatttaagtccatcgtc
tggcaagactctgtaatacacgcggtaattatcgatgacattttcagatggctctcagaa
gaaaggcaaactggaattccctcgagcgcccgacccacgattctggccgtagacaagatt
gcgcaaactctccagacattcggcgaactcgcgattgcttaccaagatgagactcacgat
tattacacgtccgctttgagaaatgcggtctctgaaattgagcagggtaaacggaaggcc
ggagaatacgccccctggttccttgccaagatggtcgaagaggaaaatcgggtacgcgag
tgtttccatacgtttacactccaactattggcgcgcgacttgagaaaagtgggtcaatcc
gaaacaaccgacaaagtgatagagttggctgttgaacaagctatgagcaacgacgaagca
aaggggttctcagaattgtaccatttttccattgaaactgataaattcgcttctctcgtc
aaatctcttgaaaactaccttgccaagagagtttcaacactcatttccgacccagtcaat
gatccacgtatgatagacgaaaccctcaaactcaaacgtttcgccgaaaaaactgtatcc
aacctcttttccgaggaagacaccgaacctcttccagcggatgaagatgtaaagatgatt
tcggttgaggagaaagaggagagagaaaaagagaaggaagctgcaaaggaaaagaggcaa
agtgtgagaatgagaatgtttgaactcgaagaagccgtcaggtcgggcttcaagacagga
atgggtagtcgacaaaacgcccctgccgaatggattgccaagcatctcgatgccgccatg
cgtaaaggccaaggatccggcactgaagaacagtttaataatcacttggatgagattgtc
acactgatcgggtttaccaaagacaaagatgtgttcaaggcattttactcgagtcaattg
gccaagaggctgttgttgaataaaagtgcgagtaatgatcaggaaaagaccatggtggca
aaacttcaaaaggagctgggagaagaattcacgtcgggagatgtgatgatgaaggacctt
caactttcagaaacgctcgtacgatcataccaactggcacagtccagaggtccagcacag
tatggcgagacatccaactttaccgccaacgtactcactgagtctgcatggcctgcctat
cccctcctcaaagacggctggaatttccaccttactccatcccttcaatcctcaatcgac
gatttcacctcctggtacaccactcaacacaagaaccgtgtcctctcctggcgattccaa
cttgcaactgttactcttaccgcccgattcccaagtggacggtacgaagtcggggtcagc
ctattccaggcggtcgtgctccttttgtataatgagattgaaagcttgacatttgcggaa
attaaggagaggactggtatcgagaataatgaattggtcagaacacttcaatcgttagcg
ctaggtaggaaaggtacccgagttcttcttaagaagccctccggcaaggaggtcaatcct
acagatatctttgcttggaacaagggcttcacgagcgaacgcatcaaattcaaaatcaac
cagatccaacaggatatgtctgcggaagaatcccgcaagacaaacgaacaagtcgctctc
gaccgagtgtccatcctcgaagctaccattgtccgaatcatgaaatcccgcaagaagctt
accctccagctgttgattgatggggtcgttagcgacgtctcaaaaaggttcccgccggat
gtgaaggagattaagaagagggtggagagcctgattgaacgagaattcatggcccgagac
gaggaagatcgatctattctccactatgttgcttaa |
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