Cryptococcus deneoformans JEC21: CNH00630
Help
Entry
CNH00630 CDS
T00243
Name
(RefSeq) Rab guanyl-nucleotide exchange factor, putative
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
cne
Cryptococcus deneoformans JEC21
Pathway
cne04138
Autophagy - yeast
cne04142
Lysosome biogenesis
cne04145
Phagocytosis
cne04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
CNH00630
04142 Lysosome biogenesis
CNH00630
04138 Autophagy - yeast
CNH00630
04148 Efferocytosis
CNH00630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cne04131
]
CNH00630
Membrane trafficking [BR:
cne04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
CNH00630
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
zf-Vps39_C
Clathrin
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
3258998
NCBI-ProteinID:
XP_572256
UniProt:
Q5KCD5
LinkDB
All DBs
Position
8:join(1002142..1002391,1002432..1002769,1002834..1002904,1002959..1003100,1003160..1003451,1003516..1003618,1003680..1004072,1004136..1004192,1004250..1004316)
Genome browser
AA seq
570 aa
AA seq
DB search
MEVFVLYNVNPALVLSLFPGKSISEKLGVRKEGWMELFGAPRGASLGAGEQTQSVHVNEE
KGGDASSVKSTNTSVKASQGDDEPPKAALEALMYFLSDRRQKLTGAISALPPSSPLPAES
SLPAFSSLPAPALHSLPSIIPFAEMSPEELVRMAQVVYTGLMRVYLKARPVLVGSLCRIE
NWCDVKEVEGLLKEERKFSDLIDLYQGKKMHRKALTMLRELAKEEDDKLDRYPPTISYLH
KLGAADLDLILESSKWILEEDPGMGLTIFTADEPEIESLPRDRITSFLSSIDRGACEGYL
EYIIWTLGEKGGEFHDTLAELYMVDSRVKVESGAEAGAYDKLLAFLNDSTHYRPYRVMNK
LSGKEMPEARAILLGRMGKHEEALKIYVYRLQDYAAAESYCVKAYQSTNNVFLLLLQLYL
RPPPPLSPSPTPKPKPTPKSTPASTHLPPALSLISKHSTSLPPSSVLDLLPPLVSIADIH
PFFIKTLREEHRRKLEGRVMRQLGKGRKDEVEEMLMGLEVKRVRVTDQRICPQCHKRLGM
SAIAVHAPRGEVTHLHCKDRFSAKLAASRE
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgtttgtcctctacaacgtcaaccctgcgctcgtgctctcgcttttcccgggg
aaaagtatttcggaaaagctgggcgtgcggaaggaggggtggatggagttgtttggtgcg
ccgcggggcgcgagcctgggtgcgggcgagcaaacacaaagcgtgcacgtaaacgaagaa
aaaggcggcgatgcgtccagtgtaaagagtacaaacacgagtgtaaaagctagtcaaggc
gatgacgaaccgcccaaagcagccctcgaagcactcatgtactttctctccgaccgccgc
caaaagctaaccggcgccatatccgccctccccccctcctccccgctccccgccgaatcc
tccctccccgccttctcctccctccccgctcccgccctccactccctcccgtccatcata
cccttcgccgagatgagcccggaagaactggtgaggatggcgcaggtggtgtacaccggc
ttgatgagggtctacctcaaagcgaggccggtgttggtaggcagtttgtgtaggatcgag
aattggtgtgatgtcaaagaggtcgaggggttgttgaaggaggaaaggaaattcagcgat
ttgatagatctttatcaagggaagaagatgcatagaaaagcgctgacgatgctgcgcgaa
ctggcaaaggaagaagacgataaactagatcgctacccgcccaccatctcgtacctacac
aaactcggagcagccgatctggatcttattctagaatcctcgaaatggatactggaagag
gatccgggaatgggtctcaccatattcacggcggatgaacccgagattgaatccctcccc
cgggacaggatcacatccttcctctcctccatcgaccgaggagcctgtgagggttatttg
gaatatatcatctggaccctaggcgaaaaggggggcgagtttcatgatacgcttgcagag
ctttacatggttgattcgcgagtcaaagttgagtccggagccgaagccggggcgtacgat
aagctgttggcgttcttgaacgattcgactcattatagaccgtatcgggtgatgaacaag
ctctctggcaaagagatgccagaggcaagagcgattcttttaggaaggatgggcaagcat
gaagaagcgctcaagatttacgtgtaccgtttacaagactatgccgctgctgaatcgtat
tgcgttaaagcttaccaatcaacaaacaacgtcttcctcctccttctccaactctatctc
cgtcctccaccccctttatcgccatcccccacacccaaacccaaacccacacccaaatcc
acgcccgcctccacccacctaccacctgctctctccctcatctccaaacactccacctcc
ctccccccctcctccgtcctcgacctcctccccccactcgtctccatcgccgacatccac
ccattcttcataaagactttacgggaggaacaccggcgtaagctcgagggaagggtgatg
aggcagctcggcaaggggaggaaagacgaggtggaggaaatgttgatggggttggaagtc
aagagggtgagagtgacggatcagagaatatgtccgcaatgccacaagagactgggcatg
tctgccattgcagtgcacgcgccaagaggcgaagtgacgcatctccattgcaaggacagg
tttagtgcaaagctggctgcttccagagaatag
DBGET
integrated database retrieval system
