Cryptococcus deneoformans JEC21: CNH00770
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Entry
CNH00770 CDS
T00243
Name
(RefSeq) activator 1 41 kda subunit, putative
KO
K10755
replication factor C subunit 2/4
Organism
cne
Cryptococcus deneoformans JEC21
Pathway
cne03030
DNA replication
cne03410
Base excision repair
cne03420
Nucleotide excision repair
cne03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CNH00770
03410 Base excision repair
CNH00770
03420 Nucleotide excision repair
CNH00770
03430 Mismatch repair
CNH00770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cne03032
]
CNH00770
03036 Chromosome and associated proteins [BR:
cne03036
]
CNH00770
03400 DNA repair and recombination proteins [BR:
cne03400
]
CNH00770
DNA replication proteins [BR:
cne03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
CNH00770
DNA Replication Termination Factors
ELG1-RFC complex
CNH00770
Chromosome and associated proteins [BR:
cne03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
CNH00770
DNA repair and recombination proteins [BR:
cne03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
CNH00770
Check point factors
HRAD17(Rad24)-RFC complex
CNH00770
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
Rep_fac_C
DNA_pol3_delta2
Rad17
AAA_lid_RFC1
AAA_22
AAA_11
RCF1-5-like_lid
AAA_16
RuvB_N
Mg_chelatase
SLFN-g3_helicase
AAA_30
AAA_assoc_2
AAA_19
AAA_14
DEAD
AAA_28
ResIII
AAA_7
AAA_24
AAA_5
AAA_2
DUF815
bpMoxR
Cdc6_lid
nSTAND3
AAA_25
Motif
Other DBs
NCBI-GeneID:
3259126
NCBI-ProteinID:
XP_024513318
UniProt:
Q5KCE8
LinkDB
All DBs
Position
8:join(969271..969341,969515..969593,969698..969777,969875..970000,970089..970241,970365..970485,970600..970720,970830..971005,971128..971292)
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AA seq
363 aa
AA seq
DB search
MSAFAPRPVVPIKDPKLQPWVEKYRPKTIDDVSSQDNTVAVLRKALASTNLPHMLFYGPP
GTGKTSTILALARQLFGPDLFRARVLELNASDERGISVVREKIKSFARETPRHAPAVSSD
GKEYPCPPFKLIILDEADSMTQDAQSALRRIMETYSKITRFCLVCNYVTRIIEPLASRCS
KFRFKPLEQGSTRARMEMIAENEGVQTDPGVISLILELAGGDLRKAITYLQTAQRLHSSI
EPPMPVSALSIHEISGVVPEDLITDLLAAMGVDRQTGIDHSLARGFDGVKIAVTRVEREG
WSVGQVLEQIHDTLIPIPSIPAIQKSLAGIAIAECDKGLCEGGDEELQLLDCMLRIKDIM
GRQ
NT seq
1092 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcattcgctccccgaccagtcgttcctattaaagatcctaaactccagccctgg
gtcgaaaagtatcgtccgaaaacaatcgatgatgtctcaagccaggacaacaccgtcgcc
gtccttcgaaaggccttagcttcaaccaacttaccgcatatgttgttttatggtcctcca
gggactggaaagacgagtacgattttggctttggctcgtcagcttttcggccccgaccta
tttcgtgcgcgagtgttggagttgaatgcgtctgatgaacgaggtatctcagtagtaagg
gagaagataaagagttttgcgagggaaacaccgaggcatgctcctgctgtatcttcagat
ggcaaagaatacccctgcccaccgttcaagttgatcatcctggacgaagcggactccatg
acgcaggatgcgcaatcggcgttgagaagaattatggagacgtattcaaagattactcga
ttctgtcttgtgtgcaattatgttacaaggataattgagcccctcgcgtcaagatgtagc
aagtttaggttcaaaccactcgaacaggggagtacaagagcgagaatggagatgattgca
gagaatgaaggtgtacaaaccgatcccggagtgatttcgcttattcttgaacttgctggg
ggtgatttgcgaaaggcgattacatacctccaaacagctcagagattacatagttcaatc
gagccacctatgcctgtctctgctctatccatacacgaaatatctggcgttgtcccagaa
gatctgatcacagatctcctcgctgcgatgggcgtcgataggcaaactgggatcgatcac
agtctggcaagaggatttgatggtgttaagattgctgtgacgcgagttgaacgggaaggg
tggagtgtagggcaagtgcttgagcagatccacgacactctcatacccattccaagtatc
ccagccattcaaaagagtttggccggcattgcaatcgcagaatgcgataaaggattgtgc
gagggaggggatgaagagttgcagcttttagattgtatgttgagaattaaggatatcatg
ggtagacaataa
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integrated database retrieval system
